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Update Manifest, test ComponentArrays fix #2083

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Feb 20, 2025
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Update Manifest, test ComponentArrays fix #2083

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141 changes: 48 additions & 93 deletions Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

julia_version = "1.11.3"
manifest_format = "2.0"
project_hash = "728a3147f36fe80499c0ee10fefc8d0d614823e8"
project_hash = "921c2f0c042509feb4a1950ec24084c1ad561dd0"

[[deps.ADTypes]]
git-tree-sha1 = "fb97701c117c8162e84dfcf80215caa904aef44f"
Expand Down Expand Up @@ -58,12 +58,13 @@ version = "0.1.41"

[[deps.Adapt]]
deps = ["LinearAlgebra", "Requires"]
git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140"
git-tree-sha1 = "cd8b948862abee8f3d3e9b73a102a9ca924debb0"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "4.1.1"
weakdeps = ["StaticArrays"]
version = "4.2.0"
weakdeps = ["SparseArrays", "StaticArrays"]

[deps.Adapt.extensions]
AdaptSparseArraysExt = "SparseArrays"
AdaptStaticArraysExt = "StaticArrays"

[[deps.AdaptivePredicates]]
Expand Down Expand Up @@ -132,9 +133,9 @@ version = "7.18.0"

[[deps.ArrayLayouts]]
deps = ["FillArrays", "LinearAlgebra"]
git-tree-sha1 = "2bf6e01f453284cb61c312836b4680331ddfc44b"
git-tree-sha1 = "4e25216b8fea1908a0ce0f5d87368587899f75be"
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
version = "1.11.0"
version = "1.11.1"
weakdeps = ["SparseArrays"]

[deps.ArrayLayouts.extensions]
Expand Down Expand Up @@ -373,7 +374,9 @@ version = "1.1.1+0"

[[deps.ComponentArrays]]
deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "ForwardDiff", "Functors", "LinearAlgebra", "StaticArrayInterface", "StaticArraysCore"]
git-tree-sha1 = "9bcd3f84b0f863ff548bd16f4776e4c7ab929fab"
git-tree-sha1 = "141514daad8ff8dca29bc3e209817b53d7e3964f"
repo-rev = "reshape"
repo-url = "https://github.com/visr/ComponentArrays.jl"
uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66"
version = "0.15.24"

Expand Down Expand Up @@ -519,9 +522,9 @@ version = "1.6.4"

[[deps.DiffEqBase]]
deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"]
git-tree-sha1 = "dc9ae379711728c2e651648ef0fb8b43be963744"
git-tree-sha1 = "df4954f297a09f05e1f84a049566ae93d5304477"
uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
version = "6.164.0"
version = "6.164.1"

[deps.DiffEqBase.extensions]
DiffEqBaseCUDAExt = "CUDA"
Expand Down Expand Up @@ -557,9 +560,9 @@ version = "6.164.0"

[[deps.DiffEqCallbacks]]
deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
git-tree-sha1 = "f6bc598f21c7bf2f7885cff9b3c9078e606ab075"
git-tree-sha1 = "c4966e57a993a181b6d613cf0d267c46fe49139d"
uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
version = "4.2.2"
version = "4.3.0"

[[deps.DiffResults]]
deps = ["StaticArraysCore"]
Expand Down Expand Up @@ -738,12 +741,6 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef"
uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a"
version = "0.3.2"

[[deps.FastLapackInterface]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660"
uuid = "29a986be-02c6-4525-aec4-84b980013641"
version = "2.0.4"

[[deps.FastPower]]
git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb"
uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b"
Expand Down Expand Up @@ -925,9 +922,9 @@ version = "1.4.1"

[[deps.GeometryBasics]]
deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "PrecompileTools", "Random", "StaticArrays"]
git-tree-sha1 = "f0895e73ba6c469ec8efaa13712eb5ee1a3647a3"
git-tree-sha1 = "3ba0e2818cc2ff79a5989d4dca4bc63120a98bd9"
uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
version = "0.5.2"
version = "0.5.5"

[[deps.Gettext_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
Expand Down Expand Up @@ -999,12 +996,6 @@ git-tree-sha1 = "26694f04567e584b054b9f33a810cec52adafa38"
uuid = "8fd58aa0-07eb-5a78-9b36-339c94fd15ea"
version = "1.9.0+0"

[[deps.HostCPUFeatures]]
deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"]
git-tree-sha1 = "8e070b599339d622e9a081d17230d74a5c473293"
uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0"
version = "0.1.17"

[[deps.HypergeometricFunctions]]
deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
git-tree-sha1 = "2bd56245074fab4015b9174f24ceba8293209053"
Expand Down Expand Up @@ -1071,9 +1062,9 @@ version = "1.0.0"

[[deps.Infiltrator]]
deps = ["InteractiveUtils", "Markdown", "REPL", "UUIDs"]
git-tree-sha1 = "8703ba00a0d3e19649abb8ed2244cae83ce97bea"
git-tree-sha1 = "139299acf639f1bbfecd3058f116e91e212d359a"
uuid = "5903a43b-9cc3-4c30-8d17-598619ec4e9b"
version = "1.8.4"
version = "1.8.6"

[[deps.Inflate]]
git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d"
Expand Down Expand Up @@ -1229,12 +1220,6 @@ git-tree-sha1 = "4bf4b400a8234cff0f177da4a160a90296159ce9"
uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
version = "0.9.41"

[[deps.KLU]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9"
uuid = "ef3ab10e-7fda-4108-b977-705223b18434"
version = "0.6.0"

[[deps.KernelDensity]]
deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"]
git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1"
Expand Down Expand Up @@ -1425,10 +1410,10 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
version = "1.11.0"

[[deps.LinearSolve]]
deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"]
git-tree-sha1 = "5ce16a2ba4acab3be950c0ccda011a10ae05ba31"
deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "StaticArraysCore", "UnPack"]
git-tree-sha1 = "957c1e609099c1e9c68098296fbbd0c6ee07556d"
uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
version = "2.39.0"
version = "3.3.1"

[deps.LinearSolve.extensions]
LinearSolveBandedMatricesExt = "BandedMatrices"
Expand All @@ -1437,13 +1422,16 @@ version = "2.39.0"
LinearSolveCUDSSExt = "CUDSS"
LinearSolveEnzymeExt = "EnzymeCore"
LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices"
LinearSolveFastLapackInterfaceExt = "FastLapackInterface"
LinearSolveHYPREExt = "HYPRE"
LinearSolveIterativeSolversExt = "IterativeSolvers"
LinearSolveKernelAbstractionsExt = "KernelAbstractions"
LinearSolveKrylovKitExt = "KrylovKit"
LinearSolveMetalExt = "Metal"
LinearSolvePardisoExt = "Pardiso"
LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools"
LinearSolveRecursiveFactorizationExt = "RecursiveFactorization"
LinearSolveSparseArraysExt = "SparseArrays"
LinearSolveSparspakExt = "Sparspak"

[deps.LinearSolve.weakdeps]
BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
Expand All @@ -1452,13 +1440,15 @@ version = "2.39.0"
CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e"
EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e"
FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641"
HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771"
IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2"
RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4"
Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac"

[[deps.LogExpFunctions]]
deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
Expand Down Expand Up @@ -1486,17 +1476,6 @@ git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3"
uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
version = "1.1.0"

[[deps.LoopVectorization]]
deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"]
git-tree-sha1 = "8084c25a250e00ae427a379a5b607e7aed96a2dd"
uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
version = "0.12.171"
weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"]

[deps.LoopVectorization.extensions]
ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"]
SpecialFunctionsExt = "SpecialFunctions"

[[deps.LoweredCodeUtils]]
deps = ["JuliaInterpreter"]
git-tree-sha1 = "688d6d9e098109051ae33d126fcfc88c4ce4a021"
Expand Down Expand Up @@ -1630,9 +1609,9 @@ version = "0.2.4"

[[deps.MutableArithmetics]]
deps = ["LinearAlgebra", "SparseArrays", "Test"]
git-tree-sha1 = "9c0bc309df575c85422232eedfb74d5a9c155401"
git-tree-sha1 = "491bdcdc943fcbc4c005900d7463c9f216aabf4c"
uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
version = "1.6.3"
version = "1.6.4"

[[deps.NLSolversBase]]
deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
Expand Down Expand Up @@ -1821,9 +1800,9 @@ weakdeps = ["EnzymeCore"]

[[deps.OrdinaryDiffEqDifferentiation]]
deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays"]
git-tree-sha1 = "e4adff09a6d47b74c16e7e08f10fa32000e2e5ed"
git-tree-sha1 = "9a535370247496c1375ba6d08b0493c0d856d25b"
uuid = "4302a76b-040a-498a-8c04-15b101fed76b"
version = "1.3.0"
version = "1.4.0"

[[deps.OrdinaryDiffEqLowOrderRK]]
deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"]
Expand All @@ -1833,15 +1812,15 @@ version = "1.2.0"

[[deps.OrdinaryDiffEqNonlinearSolve]]
deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "StaticArrays"]
git-tree-sha1 = "aa125beefcf50e579a19b5b452c34889f9cd8bed"
git-tree-sha1 = "1b89e3e84752a3cbd2c94db565e6ea7acb5279b2"
uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8"
version = "1.4.0"
version = "1.5.0"

[[deps.OrdinaryDiffEqRosenbrock]]
deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "Static"]
git-tree-sha1 = "d5c6fef9511ea40e2551ce6a903c556eb55ef2a9"
git-tree-sha1 = "2c79566a08201524bad4a11ab32c621e185c5ead"
uuid = "43230ef6-c299-4910-a778-202eb28ce4ce"
version = "1.5.0"
version = "1.6.0"

[[deps.OrdinaryDiffEqSDIRK]]
deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"]
Expand All @@ -1857,9 +1836,9 @@ version = "1.1.0"

[[deps.OteraEngine]]
deps = ["Markdown", "TOML"]
git-tree-sha1 = "9e0a1f6d31570bba27b502b0e62080b3a4f7a1cb"
git-tree-sha1 = "a34e46fcd5e532a829345ec035dffe4877763cc6"
uuid = "b2d7f28f-acd6-4007-8b26-bc27716e5513"
version = "1.1.0"
version = "1.1.1"

[[deps.PCRE2_jll]]
deps = ["Artifacts", "Libdl"]
Expand All @@ -1874,9 +1853,9 @@ version = "0.11.32"

[[deps.PNGFiles]]
deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
git-tree-sha1 = "67186a2bc9a90f9f85ff3cc8277868961fb57cbd"
git-tree-sha1 = "cf181f0b1e6a18dfeb0ee8acc4a9d1672499626c"
uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883"
version = "0.4.3"
version = "0.4.4"

[[deps.PackageCompiler]]
deps = ["Artifacts", "Glob", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs", "p7zip_jll"]
Expand Down Expand Up @@ -2105,12 +2084,6 @@ version = "3.29.0"
Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"

[[deps.RecursiveFactorization]]
deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"]
git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6"
uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4"
version = "0.2.23"

[[deps.Reexport]]
git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
Expand Down Expand Up @@ -2186,12 +2159,6 @@ git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c"
uuid = "94e857df-77ce-4151-89e5-788b33177be4"
version = "0.1.0"

[[deps.SLEEFPirates]]
deps = ["IfElse", "Static", "VectorizationBase"]
git-tree-sha1 = "456f610ca2fbd1c14f5fcf31c6bfadc55e7d66e0"
uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa"
version = "0.6.43"

[[deps.SQLite]]
deps = ["DBInterface", "Random", "SQLite_jll", "Serialization", "Tables", "WeakRefStrings"]
git-tree-sha1 = "38b82dbc52b7db40bea182688c7a1103d06948a4"
Expand Down Expand Up @@ -2403,12 +2370,6 @@ weakdeps = ["Colors"]
[deps.SparseMatrixColorings.extensions]
SparseMatrixColoringsColorsExt = "Colors"

[[deps.Sparspak]]
deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"]
git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7"
uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac"
version = "0.3.9"

[[deps.SpecialFunctions]]
deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
git-tree-sha1 = "64cca0c26b4f31ba18f13f6c12af7c85f478cfde"
Expand Down Expand Up @@ -2646,21 +2607,21 @@ weakdeps = ["RecipesBase"]

[[deps.TimerOutputs]]
deps = ["ExprTools", "Printf"]
git-tree-sha1 = "d7298ebdfa1654583468a487e8e83fae9d72dac3"
git-tree-sha1 = "3832505b94c1868baea47764127e6d36b5c9f29e"
uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
version = "0.5.26"
version = "0.5.27"

[deps.TimerOutputs.extensions]
FlameGraphsExt = "FlameGraphs"

[deps.TimerOutputs.weakdeps]
FlameGraphs = "08572546-2f56-4bcf-ba4e-bab62c3a3f89"

[[deps.TranscodingStreams]]
git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.11.3"

[[deps.TriangularSolve]]
deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"]
git-tree-sha1 = "be986ad9dac14888ba338c2554dcfec6939e1393"
uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf"
version = "0.2.1"

[[deps.TriplotBase]]
git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b"
uuid = "981d1d27-644d-49a2-9326-4793e63143c3"
Expand Down Expand Up @@ -2703,12 +2664,6 @@ weakdeps = ["ConstructionBase", "InverseFunctions"]
ConstructionBaseUnitfulExt = "ConstructionBase"
InverseFunctionsUnitfulExt = "InverseFunctions"

[[deps.VectorizationBase]]
deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"]
git-tree-sha1 = "4ab62a49f1d8d9548a1c8d1a75e5f55cf196f64e"
uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
version = "0.21.71"

[[deps.VersionParsing]]
git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868"
uuid = "81def892-9a0e-5fdd-b105-ffc91e053289"
Expand Down
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