diff --git a/Manifest.toml b/Manifest.toml index 4a65f2197..f2c684d99 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "921c2f0c042509feb4a1950ec24084c1ad561dd0" [[deps.ADTypes]] -git-tree-sha1 = "e1ce448a0d7f88168ffe2eeac4549c32d45a42d1" +git-tree-sha1 = "fb97701c117c8162e84dfcf80215caa904aef44f" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.12.1" +version = "1.13.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -292,9 +292,9 @@ version = "0.4.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.6" +version = "0.7.8" [[deps.CodecZstd]] deps = ["TranscodingStreams", "Zstd_jll"] @@ -310,9 +310,9 @@ version = "0.4.1" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "26ec26c98ae1453c692efded2b17e15125a5bea1" +git-tree-sha1 = "403f2d8e209681fcbd9468a8514efff3ea08452e" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.28.0" +version = "3.29.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -415,9 +415,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "f36e5e8fdffcb5646ea5da81495a5a7566005127" +git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.4.3" +version = "2.5.0" [[deps.Conda]] deps = ["Downloads", "JSON", "VersionParsing"] @@ -516,16 +516,18 @@ uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" version = "1.6.4" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] -git-tree-sha1 = "b1e23a7fe7371934d9d538114a7e7166c1d09e05" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] +git-tree-sha1 = "024cfd2a0549908f311da157416edb9cbfa7d1f4" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.161.0" +version = "6.163.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseForwardDiffExt = ["ForwardDiff"] + DiffEqBaseGTPSAExt = "GTPSA" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -540,6 +542,8 @@ version = "6.161.0" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -569,9 +573,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "0c21d9ab346ae9eedb10bd33ea4520de6980a39b" +git-tree-sha1 = "087720e4391faac4bc5b5f4315794b3309264c6f" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.39" +version = "0.6.40" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -732,12 +736,6 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastLapackInterface]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" -uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "2.0.4" - [[deps.FastPower]] git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" @@ -779,9 +777,9 @@ version = "0.8.3" [[deps.FilePathsBase]] deps = ["Compat", "Dates"] -git-tree-sha1 = "7878ff7172a8e6beedd1dea14bd27c3c6340d361" +git-tree-sha1 = "2ec417fc319faa2d768621085cc1feebbdee686b" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.22" +version = "0.9.23" weakdeps = ["Mmap", "Test"] [deps.FilePathsBase.extensions] @@ -993,12 +991,6 @@ git-tree-sha1 = "26694f04567e584b054b9f33a810cec52adafa38" uuid = "8fd58aa0-07eb-5a78-9b36-339c94fd15ea" version = "1.9.0+0" -[[deps.HostCPUFeatures]] -deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "8e070b599339d622e9a081d17230d74a5c473293" -uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.17" - [[deps.HypergeometricFunctions]] deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] git-tree-sha1 = "2bd56245074fab4015b9174f24ceba8293209053" @@ -1065,9 +1057,9 @@ version = "1.0.0" [[deps.Infiltrator]] deps = ["InteractiveUtils", "Markdown", "REPL", "UUIDs"] -git-tree-sha1 = "38298a8eabe09e49e6f60927c9e1ca3481688ba0" +git-tree-sha1 = "8703ba00a0d3e19649abb8ed2244cae83ce97bea" uuid = "5903a43b-9cc3-4c30-8d17-598619ec4e9b" -version = "1.8.3" +version = "1.8.4" [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" @@ -1107,9 +1099,9 @@ weakdeps = ["Unitful"] [[deps.IntervalArithmetic]] deps = ["CRlibm_jll", "LinearAlgebra", "MacroTools", "RoundingEmulator"] -git-tree-sha1 = "eb6ca9aef11db0c08b7ac0a5952c6c6ba6fbebf0" +git-tree-sha1 = "0fcf2079f918f68c6412cab5f2679822cbd7357f" uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" -version = "0.22.22" +version = "0.22.23" weakdeps = ["DiffRules", "ForwardDiff", "IntervalSets", "RecipesBase"] [deps.IntervalArithmetic.extensions] @@ -1207,9 +1199,9 @@ version = "3.1.1+0" [[deps.JuMP]] deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"] -git-tree-sha1 = "02b6e65736debc1f47b40b0f7d5dfa0217ee1f09" +git-tree-sha1 = "cf832644f225dbe721bb9b97bf432007765fc695" uuid = "4076af6c-e467-56ae-b986-b466b2749572" -version = "1.23.6" +version = "1.24.0" [deps.JuMP.extensions] JuMPDimensionalDataExt = "DimensionalData" @@ -1219,15 +1211,9 @@ version = "1.23.6" [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "a729439c18f7112cbbd9fcdc1771ecc7f071df6a" +git-tree-sha1 = "4bf4b400a8234cff0f177da4a160a90296159ce9" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.39" - -[[deps.KLU]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" -uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.6.0" +version = "0.9.41" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -1278,9 +1264,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "795ae125c98c58ceb1de562633703e0b120a1b17" +git-tree-sha1 = "8c739d0eee1d00f3411dcc8c28ba732f84480635" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.4.0" +version = "2.6.0" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1419,10 +1405,10 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "9d5872d134bd33dd3e120767004f760770958863" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "3bd30a72a9abd844229cb70e1524661d1990f1c3" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.38.0" +version = "3.1.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -1431,13 +1417,16 @@ version = "2.38.0" LinearSolveCUDSSExt = "CUDSS" LinearSolveEnzymeExt = "EnzymeCore" LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" + LinearSolveFastLapackInterfaceExt = "FastLapackInterface" LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolvePardisoExt = "Pardiso" - LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" + LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" + LinearSolveSparseArraysExt = "SparseArrays" + LinearSolveSparspakExt = "Sparspak" [deps.LinearSolve.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" @@ -1446,13 +1435,15 @@ version = "2.38.0" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" + Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1480,17 +1471,6 @@ git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.1.0" -[[deps.LoopVectorization]] -deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "8084c25a250e00ae427a379a5b607e7aed96a2dd" -uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.171" -weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] - - [deps.LoopVectorization.extensions] - ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] - SpecialFunctionsExt = "SpecialFunctions" - [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] git-tree-sha1 = "688d6d9e098109051ae33d126fcfc88c4ce4a021" @@ -1554,9 +1534,9 @@ version = "1.1.0" [[deps.MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON3", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "f5f67affb675630421d169ffd5dfa00cffcc07ca" +git-tree-sha1 = "cfc8c22e3b0157430fc80eb6ef46546483356ea9" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.35.2" +version = "1.36.0" [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] @@ -1652,9 +1632,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d0caebdb5a31e1a11ca9f7f189cdbf341ac89f0e" +git-tree-sha1 = "95def4e218a6832d158feafb9963be0337ea432c" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.3.0" +version = "4.4.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1684,9 +1664,9 @@ version = "4.3.0" [[deps.NonlinearSolveBase]] deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "5bca24ce7b0c034dcbdc6ad6d658b02e0eed566e" +git-tree-sha1 = "7e5d8ce9fa2ef8f414bb5fd8aafd1c384785cafc" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "1.4.0" +version = "1.4.1" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1708,15 +1688,15 @@ version = "1.4.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "a1ea35ab0bcc99753e26d574ba1e339f19d100fa" +git-tree-sha1 = "aade7ab02ee4c80ec30dc8a2874fc67155c935f1" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.2.0" +version = "1.3.0" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "8f14b848afcfc0a2941cd3cca1bef04c987465bb" +git-tree-sha1 = "44a132cb32aeafcb35a6238fd91a2f3f8ff5c5b0" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.1.0" +version = "1.2.0" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1776,9 +1756,9 @@ version = "0.8.1+2" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10" +git-tree-sha1 = "a9697f1d06cc3eb3fb3ad49cc67f2cfabaac31ea" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.15+3" +version = "3.0.16+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1805,9 +1785,9 @@ version = "1.2.0" [[deps.OrdinaryDiffEqCore]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleUnPack", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "6a58da59c5f7640fd09636231bd73dfb4744ce53" +git-tree-sha1 = "267516d68159ba75f6430fcda1dd6d771cfba74c" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "1.15.1" +version = "1.17.0" weakdeps = ["EnzymeCore"] [deps.OrdinaryDiffEqCore.extensions] @@ -1815,9 +1795,9 @@ weakdeps = ["EnzymeCore"] [[deps.OrdinaryDiffEqDifferentiation]] deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays"] -git-tree-sha1 = "e4adff09a6d47b74c16e7e08f10fa32000e2e5ed" +git-tree-sha1 = "9a535370247496c1375ba6d08b0493c0d856d25b" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "1.3.0" +version = "1.4.0" [[deps.OrdinaryDiffEqLowOrderRK]] deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] @@ -1827,15 +1807,15 @@ version = "1.2.0" [[deps.OrdinaryDiffEqNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "StaticArrays"] -git-tree-sha1 = "3a3eb0b7ef3f996c468d6f8013eac9525bcfd788" +git-tree-sha1 = "aa125beefcf50e579a19b5b452c34889f9cd8bed" uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8" -version = "1.3.0" +version = "1.4.0" [[deps.OrdinaryDiffEqRosenbrock]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "Static"] -git-tree-sha1 = "749518f27e886164ee07e6df49b631beaca8c9ac" +git-tree-sha1 = "d5c6fef9511ea40e2551ce6a903c556eb55ef2a9" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.4.0" +version = "1.5.0" [[deps.OrdinaryDiffEqSDIRK]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] @@ -1898,9 +1878,9 @@ version = "0.5.12" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ed6834e95bd326c52d5675b4181386dfbe885afb" +git-tree-sha1 = "3b31172c032a1def20c98dae3f2cdc9d10e3b561" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.55.5+0" +version = "1.56.1+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1966,15 +1946,17 @@ version = "1.4.3" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "6c62ce45f268f3f958821a1e5192cf91c75ae89c" +git-tree-sha1 = "8765738bc5a6f1554cb61c5ddfae5bf279e8b110" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.24" +version = "0.4.25" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" + PreallocationToolsSparseConnectivityTracerExt = "SparseConnectivityTracer" [deps.PreallocationTools.weakdeps] ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" [[deps.PrecompileTools]] deps = ["Preferences"] @@ -2028,9 +2010,9 @@ version = "1.0.1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da" +git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.1" +version = "2.11.2" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2071,9 +2053,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "ea6ad53c168c7c1c2e8f870aefda269692a8a91f" +git-tree-sha1 = "fe9d37a17ab4d41a98951332ee8067f8dca8c4c2" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.28.0" +version = "3.29.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2097,12 +2079,6 @@ version = "3.28.0" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" -[[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" -uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.23" - [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -2178,12 +2154,6 @@ git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" -[[deps.SLEEFPirates]] -deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "456f610ca2fbd1c14f5fcf31c6bfadc55e7d66e0" -uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.43" - [[deps.SQLite]] deps = ["DBInterface", "Random", "SQLite_jll", "Serialization", "Tables", "WeakRefStrings"] git-tree-sha1 = "38b82dbc52b7db40bea182688c7a1103d06948a4" @@ -2198,9 +2168,9 @@ version = "3.48.0+0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "46c4a97031b9437d5adbb382958820a8ee188c64" +git-tree-sha1 = "ffed2507209da5b42c6881944ef41a340ab5449b" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.72.2" +version = "2.74.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2347,9 +2317,9 @@ version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "f6d636dcf886cf498b3bc484f48c37741d8aac6e" +git-tree-sha1 = "729103d096200b80d20321c46d7703fe87ee756e" uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" -version = "0.6.10" +version = "0.6.12" [deps.SparseConnectivityTracer.extensions] SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations" @@ -2387,20 +2357,14 @@ version = "2.23.1" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "45b5ef11e75839e174d5728fd1e73597e7593634" +git-tree-sha1 = "97092c0a40d6033b7da27ea15bcf75fd5b446254" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.12" +version = "0.4.13" weakdeps = ["Colors"] [deps.SparseMatrixColorings.extensions] SparseMatrixColoringsColorsExt = "Colors" -[[deps.Sparspak]] -deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" -uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.9" - [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "64cca0c26b4f31ba18f13f6c12af7c85f478cfde" @@ -2442,9 +2406,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "02c8bd479d26dbeff8a7eb1d77edfc10dacabc01" +git-tree-sha1 = "e3be13f448a43610f978d29b7adf78c76022467a" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.11" +version = "1.9.12" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2497,9 +2461,9 @@ version = "0.5.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3" +git-tree-sha1 = "725421ae8e530ec29bcbdddbe91ff8053421d023" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.4.0" +version = "0.4.1" [[deps.StringViews]] git-tree-sha1 = "ec4bf39f7d25db401bcab2f11d2929798c0578e5" @@ -2559,9 +2523,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "006a327222dda856e2304959e566ff0104ac8594" +git-tree-sha1 = "7def47e953a91cdcebd08fbe76d69d2715499a7d" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.3.1+2024b" +version = "1.4.0+2025a" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -2628,9 +2592,9 @@ version = "0.11.3" [[deps.TimeZones]] deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "fcbcffdc11524d08523e92ae52214b29d90b50bb" +git-tree-sha1 = "38bb1023fb94bfbaf2a29e1e0de4bbba6fe0bf6d" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.20.0" +version = "1.21.2" weakdeps = ["RecipesBase"] [deps.TimeZones.extensions] @@ -2647,12 +2611,6 @@ git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.11.3" -[[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "be986ad9dac14888ba338c2554dcfec6939e1393" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.2.1" - [[deps.TriplotBase]] git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" uuid = "981d1d27-644d-49a2-9326-4793e63143c3" @@ -2695,12 +2653,6 @@ weakdeps = ["ConstructionBase", "InverseFunctions"] ConstructionBaseUnitfulExt = "ConstructionBase" InverseFunctionsUnitfulExt = "InverseFunctions" -[[deps.VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "4ab62a49f1d8d9548a1c8d1a75e5f55cf196f64e" -uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.71" - [[deps.VersionParsing]] git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" @@ -2732,9 +2684,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "a2fccc6559132927d4c5dc183e3e01048c6dcbd6" +git-tree-sha1 = "ee6f41aac16f6c9a8cab34e2f7a200418b1cc1e3" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.5+0" +version = "2.13.6+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] @@ -2885,9 +2837,9 @@ version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +git-tree-sha1 = "d5a767a3bb77135a99e433afe0eb14cd7f6914c3" uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2021.12.0+0" +version = "2022.0.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"]