#255 first draft of docs quick overview

DavAug · Mar 20, 2022 · 8a6f6af · 8a6f6af
1 parent c3c0d07
commit 8a6f6af
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diff --git a/chi/__init__.py b/chi/__init__.py
@@ -29,8 +29,8 @@
 
 from ._mechanistic_models import (  # noqa
     MechanisticModel,
-    PharmacodynamicModel,
-    PharmacokineticModel,
+    SBMLModel,
+    PKPDModel,
     ReducedMechanisticModel
 )
 

diff --git a/chi/_inference.py b/chi/_inference.py
@@ -748,7 +748,7 @@ def __init__(self, log_posterior):
         super(SamplingController, self).__init__(log_posterior)
 
         # Set default sampler
-        self._sampler = pints.HaarioACMC
+        self._sampler = pints.HaarioBardenetACMC
 
     def _format_chains(self, chains, names, ids, divergent_iters):
         """
@@ -776,8 +776,8 @@ def _format_chains(self, chains, names, ids, divergent_iters):
             trajectories occured, or None
         """
         # Broadcast IDs to length of names, if posterior has only one ID
-        if isinstance(ids, str):
-            ids = np.broadcast_to(ids, shape=len(names))
+        if (not ids) or isinstance(ids, str):
+            ids = [ids] * len(names)
 
         # Convert names and ids to numpy arrays
         ids = np.asarray(ids)