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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="">
<meta name="author" content="">
<title>Conceptual Modeling for Life Sciences</title>
<!-- Bootstrap core CSS -->
<link href="vendor/bootstrap/css/bootstrap.min.css" rel="stylesheet">
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</head>
<body id="page-top">
<!-- Navigation -->
<nav class="navbar navbar-expand-lg navbar-dark bg-dark fixed-top" id="mainNav">
<div class="container">
<a class="navbar-brand js-scroll-trigger" href="#page-top">CMLS@ER2024</a>
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<span class="navbar-toggler-icon"></span>
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<div class="collapse navbar-collapse" id="navbarResponsive">
<ul class="navbar-nav ml-auto">
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#about">About</a>
</li>
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#topics">Topics of Interest</a>
</li>
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#submission">Submission</a>
</li>
<!--<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#special_issue">Special Issue</a>
</li>-->
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#dates">Important Dates</a>
</li>
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<a class="nav-link js-scroll-trigger" href="#organizers">Organizers</a>
</li>
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<a class="nav-link js-scroll-trigger" href="#committee">Committee</a>
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<a class="nav-link js-scroll-trigger" href="#program">Program</a>
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<a class="nav-link js-scroll-trigger" href="#collaborations">Collaborations</a>
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<header class="text-black-50" style="background-image: url('imgs/scenario_bg.jpg'); min-height: 27rem;">
<div class="container text-center">
<h1>The 5<sup>th</sup> International Workshop <br> on Conceptual Modeling for Life Sciences</h1>
<img src="imgs/logocmls2024.png" alt="Logo CMLS" class="logo-cmls" width="320">
<br><br>
<h3>28th October, 2024 in Pittsburgh, Pennsylvania, US</h3>
<!--<h4 style="color:red;opacity: 0.7;">Hybrid workshop</h4>-->
<!--<h3 style="color:red">Online workshop</h3>-->
<br>
<h4>In conjunction with the 43<sup>rd</sup> International Conference on Conceptual Modeling (<a
href="https://resources.sei.cmu.edu/news-events/events/er2024/" target="_blank">ER 2024</a>)</h4>
<h4>28th-31st October, 2024</h4>
</div>
</header>
<!--<section id="latest">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Latest news</h2>
<p class="text-justify lead">We are giving a <b>10-days extension</b> for the last ones! New hard deadline is
<b>August 7th 2020</b>.</p>
<p class="text-justify lead"> Important info:
<ul class="lead">
<li>All accepted papers will be published by Springer in the LNCS series in the usual book that
collects all ER Workshop contributions
</li>
<li>We invite all papers accepted to the workshop to submit a revised and extended version to the
<a href="https://bmcbioinformatics.biomedcentral.com">BMC Bioinformatics journal</a> for a post-conference
supplement related to Conceptual Modeling in Life Sciences.
</li>
<li>For the <b>best paper of the workshop</b> (as assessed by the evaluations of the members of the Program
Committee) the <b>Article Processing Charges of the BMC Bioinformatics supplement will be fully
covered</b> by the organizers (GeCo at Politecnico di Milano & PROS at Universitat Politècnica de València)
</li>
</ul>
</p>
<p class="text-justify lead">
The 1st International Workshop on Conceptual Modeling for Life Sciences is going virtual, together
with the main conference <a href="https://er2020.big.tuwien.ac.at/"> ER 2020</a>.
We will soon provide further details on the platforms we will use and the
necessary logistics.
An important note upfront – there will be free registration for non-authors, and a heavily reduced
registration fee for authors presenting a paper. Registration with further details will be open on
August 15, 2020.</p>
</div>
</div>
</div>
</section>-->
<!--<section id="latest">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Latest news</h2>
<p class="text-justify lead">Thank you for everyone who joined the workshop and to all presenters for sharing their interesting research!</p>
<p class="text-justify lead"> We made a compilation of the workshop presentations. You can watch it <a href="https://www.youtube.com/watch?v=-l4OUdrkVC4&list=PLfWxoOMC6swI59BOYNw0U3L2VNJ_dqSBG&ab_channel=bioinformaticspolimi">here on YouTube</a>.
<p class="text-justify lead">Check also the Program (at the end of the page) for slides and videos of each video (we will keep loading them as we get permission from the authors).</p>
</div>
</div>
</div>
</section>-->
<!--<section id="latest">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Latest news</h2>
<p class="text-justify lead"><b>November 11th, 2022</b>: the first articles extended from CMLS 2022
papers for BMC Supplements are being published these days!
Check them out here:
<ul>
<li><a href="https://doi.org/10.1186/s12859-022-04944-z">
García S., A., Costa, M., Leon, A. et al. The challenge of managing the evolution of genomics
data over time: a conceptual model-based approach. BMC Bioinformatics 23 (Suppl 11), 472
(2022).</a></li>
<li><a href="https://doi.org/10.1186/s12911-022-02036-9">
Balderas-Díaz, S., Rodríguez-Fórtiz, M.J., Garrido, J.L. et al. A psycho-educational
intervention programme for parents with SGA foetuses supported by an adaptive mHealth system:
design, proof of concept and usability assessment. BMC Med Inform Decis Mak 22 (Suppl 4), 291
(2022).</a></li>
</ul>
Keep connected to know about the other extended papers.
<br>Also for CMLS 2022 we are planning a supplement on the same BMC Journals. </p>
</div>
</div>
</div>
</section>
-->
<section id="program">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Program</h2>
TBD
<!--
<p class="lead">
<h5>The workshop will run on Monday November 6th, 2023.</h5>
Please refer to the ER conference website for
information on the full conference program (<a
href="https://resources.sei.cmu.edu/news-events/events/er2024/" target="_blank">ER 2024 program</a>).
<br>
<br>
<br>
09.45-10.00
<br>Welcome and introduction to the CMLS workshop
<br>
<br>
10.00-10.20
<br>Sipan Arevshatyan, José Fabián Reyes Román, Elisa Caballero Calabuig, Mari Carmen Plancha,
Alejandra
Abella, Pedro Abreu and Óscar Pastor.
<i>Integrating Nuclear Medicine and Radiopharmacy Data: A Conceptual Model for Precision Medicine
and
Enhanced Patient Care.</i>
<br>
<br>
10.20-10.40
<br>Mireia Costa, Alberto García, Ana León and Oscar Pastor.
<i>Comprehensive Representation of Variation Interpretation Data via Conceptual Modeling.</i>
<br>
<br>
10.40-11.00
<br>Lidia Contreras-Ochando, Pere Marco Garcia, Ana León, Lluís F. Hurtado, Ferran Pla and Encarna Segarra.
<i>Enhancing Precision Medicine: An Automatic Pipeline Approach for Exploring Genetic
Variant-Disease
Literature.</i>
<br>
<br>
<h5>Coffee Break 11.00-11.30</h5>
<br>11.30-11.50
<br>Yasmine Anchén, Edelweis Rohrer and Regina Motz.
<i>An Ontology for Breast Cancer Screening.</i>
<br>
<br>
11.50-13.00
<br><b>Invited keynote talk by Prof. Stefano Ceri</b>, Politecnico di Milano.
<i>Data Modeling in life sciences, from theory to applications.</i>
<br>
</p>
-->
</div>
</div>
</div>
</section>
<!--<section id="invited">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Invited Talk</h2>
<p class="text-justify lead">
<img src="imgs/X.jpg" alt="stefanoceri" width="200" height="250"><br>
<h5>Stefano Ceri (Politecnico di Milano)</h5>
(see <a href="https://scholar.google.com/citations?user=aiulJmIAAAAJ&hl=en&oi=ao">Google Scholar</a>, <a
href="https://ceri.faculty.polimi.it/">Personal Webpage</a>)
<button data-toggle="collapse" data-target="#demo"> Biography</button>
<br>
<br>
<div id="demo" class="collapse">
Stefano Ceri is professor of Data Managenent at Politecnico di Milano, he was visiting professor at
Stanford University between 1983 and 1992. He designed and then directed the Alta Scuola
Politecnica. His main research interests were concerned with extending data management - by giving
foundational contributions in distributed, deductive, active, object-oriented and bio-informatic
data technologies - and then acting as data scientists in numerous domains - including social
analytics, fake news detection, genomics for biology and for precision medicine, and recently the
study of the SARS-CoV-2 viral genome.<br>
With an H-Index 83 and about 35K citations on Google Scholar, he authored over 450 articles on
international venues, receiving Best Paper and 10-Years awards at VLDB; he co-authored many books,
including “Distributed Databases: Principles and Systems”, “Logic Programming and Databases”,
“Conceptual Database Design: an Entity-Relationship Approach”, “Active Database Systems”.<br>
In 1988 he was Endowment founder and first General Chair of the “Extending Database Technology”
Conference. He is co-founder and shareholder of WebRatio, a development platform for Web
applications based on patented technology, currently employing about 50 people. He is the recipient
of two ERC AdG, “Search Computing” (2008-2013) and “data-driven Genomic Computing” (2016-2021). He
received the ACM-SIGMOD "Edward T. Codd Innovation Award" (June 2013). He is an ACM Fellow, member
of Academia Europeae and of Istituto Lombardo di Scienze e Lettere.
</div>
<br>
<b>Topic:</b>Data Modeling in life sciences, from theory to applications
<br><br>
<b>Talk abstract:</b>
Progress in life sciences is often the result of collecting huge, well-organized, high quality datasets
and then applying data science methods to understand their hidden messages. In this talk, Prof. Ceri
will report some of the results of his last ten years of research, when he discovered a strong interest
in life sciences. He will argue that data must be initially mastered at a conceptual level, i.e.
abstracted and simplified so as to become more manageable – and he will explain three data models, first
one for patient care targeted upon COVID-19, then two models respectively addressing the human and viral
genome. Prof. Ceri will then describe the process of integrating human and viral genomic data sources so
as to build huge data repositories, thereby facilitating and improving research projects. Finally, he
will discuss some new approaches, purely based upon big data and statistical methods of data science,
recently developed for the finding variants and recombinations in the SARS-CoV-2 genome; he will also
report some interesting results in other scientific domains. Most of reported work is the outcome of the
ERC-AdG grant “data-driven Genomic Computing” (GeCo, 2016-2021), and some follow-up projects.
</p>
</div>
</div>
</div>
</section>-->
<section id="about">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>About</h2>
<p class="text-justify lead">
The recent advances in unraveling the secrets of human conditions and diseases have encouraged new
paradigms for their prevention, diagnosis, and treatment. As information is increasing at an
unprecedented rate, it directly impacts the design and future development of information and data
management pipelines; thus, new ways of processing data, information, and knowledge in healthcare
environments are strongly needed.<br>
The fifth edition of the workshop aims to continue being a meeting point for Information Systems
(IS), Conceptual Modeling (CM), Data Management (DM), and Artificial Intelligence (AI) researchers
working on health care and life science problems. It is also an opportunity to share, discuss and
find new approaches to improve promising fields, with a <i>special focus on Genomic Data Management –
how to use the information from the genome to better understand biological and clinical features –
and Precision Medicine – giving to each patient an individualized treatment by understanding the
peculiar aspects of the disease</i>.<br>
From the precise ontological characterization of the components involved in complex biological
systems to the modeling of the operational processes and decision support methods used in the
diagnosis and prevention of diseases, the joined research communities of IS, CM, DM, and AI have
an important role to play; they must help in providing feasible solutions for high-quality and
efficient health care.<br>
CMLS aims to become a forum for discussing the responsibility of the conceptual modeling community
in supporting the life sciences related to these new realities.<br>
</p>
</div>
</div>
</div>
</section>
<section id="topics">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Topics of interest</h2>
<p class="text-justify lead">
The fifth edition of the workshop focuses on Conceptual Modeling as a means for facing the
challenges that emerge when designing and developing systems for life sciences, focused on
genomics and precision medicine. The workshop is not restricted to specific research methods;
we will consider both conceptual and empirical research, as well as novel applications.
</p>
<p class="text-justify lead">The topics of interest include, but are not limited to:</p>
<ul class="lead">
<li>AI and life science</li>
<li>Large Language Models for improving precision medicine and decision making</li>
<li>Conceptual models for data-driven AI systems in life sciences</li>
<li>Conceptual modeling for genomics</li>
<li>Modeling of complex biological systems and health ecosystems</li>
<li>Information systems for healthcare, genomics, or medicine of precision</li>
<li>Design, implementation, and evaluation of health information systems</li>
<li>Electronic/digital health information systems</li>
<li>Life science-related domain-specific modeling languages</li>
<li>Data management and integration for genomics and biology</li>
<li>Ontologies and workflows for life sciences</li>
<li>Clinical and biological data interoperability</li>
<li>Interoperability of health information systems</li>
<li>Knowledge representation for genetics</li>
<li>Business process modeling for genetic/clinical diagnosis</li>
<li>Conceptual model-driven big data analytics for genomics, clinical diagnosis, or biological problems </li>
<li>Models for the digital transformation of healthcare systems</li>
<li>Conceptual models in life sciences: from theory to practice</li>
<li>Models to facilitate multidisciplinary exchange in healthcare contexts</li>
<li>Virology-related conceptual models and their applications</li>
<li>Conceptual models and information systems for fighting climate change and its effects</li>
<li>Reviews focusing on a particular life science dimension</li>
</ul>
<!--<br>
<p class="text-justify lead">As we wish to stimulate more discussion in the ER community regarding the
use of models for life sciences, we welcome also “discussion papers”, particularly related to the
following topics:</p>
<ul class="lead">
<li>Conceptual models in life sciences: from theory to practice</li>
<li>Models to facilitate multidisciplinary exchange in healthcare contexts</li>
</ul>-->
</div>
</div>
</div>
</section>
<!--<section id="accepted">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Accepted papers</h2>
<p class="text-justify lead">
The list of accepted papers for CMLS 2022:</p>
<ul class="lead">
<li>Ana Xavier Fernandes, Filipa Ferreira, Ana León and Maribel Yasmina Santos.
<i>Towards a Model-driven Approach for Big Data Analytics in the Genomics Field</i>
</li>
<li>Mireia Costa, Alberto García S. and Oscar Pastor.
<i>Conceptual Modeling-based Cardiopathies Data Management</i>
</li>
<li>Francisco Manuel García Moreno, Maria Bermudez-Edo, José Manuel Perez-Marmol, Jose Luis Garrido
and Rodríguez Fórtiz María José.
<i>A Conceptual Model of Health Monitoring Systems Centred on ADLs Performance in Elderly
People</i>
</li>
<li>Mireia Costa, Alberto García S. and Oscar Pastor.
<i>A Comparative Analysis of the completeness and concordance of data sources with
cancer-associated information</i>
</li>
<li>Pietro Cinaglia and Mario Cannataro.
<i>A Flexible Automated Pipeline Engine for Transcript-level Quantification from RNA-seq</i>
</li>
</ul>
</div>
</div>
</div>
</section>
-->
<section id="submission">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Paper submission guidelines</h2>
<p class="text-justify lead">
We invite submissions of high quality papers describing original and unpublished results
regarding
any of the workshop’s topics of interest.
<br><br>
CMLS 2024 proceedings will be part of the <a
href="https://resources.sei.cmu.edu/news-events/events/er2024/">ER 2024</a>
Workshop volume published by Springer in the LNCS series.
The authors must submit manuscripts using the Springer-Verlag LNCS style for Lecture Notes in
Computer Science.
For style files and details, see the page <a
href="https://www.springer.com/gp/computer-science/lncs/conference-proceedings-guidelines">https://www.springer.com/gp/computer-science/lncs/conference-proceedings-guidelines</a>.
The page limit for workshop papers is 10 pages (plus 1-page references).
Papers must be submitted as PDF files using EasyChair at <a
href="https://easychair.org/my/conference?conf=er2024" target="_blank">https://easychair.org/my/conference?conf=er2024</a>,
choosing the track 'CMLS Workshop Paperes'.
<br><br>
To ensure high quality, all papers will be thoroughly peer reviewed by the Program Committee.
Manuscripts not submitted in the LNCS style or having more than 10 pages will not be reviewed
and thus automatically rejected.
The papers need to be original and not submitted or accepted for publication in any other
workshop, conference, or journal.
Submission to CMLS 2024 will be electronically only.
Papers will be judged on contribution, literature basis, novelty, clarity, relevance, and rigor.
The review process is double-blind. Submissions must be anonymized.
</p>
</div>
</div>
</div>
</section>
<!--<section id="cameraready">
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<div class="col-lg-8 mx-auto">
<strike><h2>Camera-ready guidelines</h2></strike>
<strike><p class="text-justify lead">
For the preparation of their manuscript camera-ready version, authors should consult <a
href="ftp://ftp.springernature.com/cs-proceeding/svproc/guidelines/Springer_Guidelines_for_Authors_of_Proceedings.pdf">Springer’s
authors’ guidelines</a>
and use their <a
href="https://www.springer.com/de/it-informatik/lncs/conference-proceedings-guidelines">proceedings
templates</a>, either for LaTeX or for Word,
for the preparation of their papers. The page limit for workshop papers is 10 pages, as for the
previously submitted version.
Springer encourages authors to include their ORCIDs in their papers.
<br><br>
In addition, the corresponding author of each paper, acting on behalf of all of the authors of that
paper,
must complete and sign a <a
href="https://drive.google.com/file/d/1FL5_jFrqayqbPRZ2nTuNKaY55_8L8xD8/view?usp=sharing">Consent-to-Publish
form</a>.
The corresponding author signing the copyright form
should match the corresponding author marked on the paper.
Once the files have been sent to Springer, changes relating to the authorship of the papers cannot
be made.
</p></strike>
</div>
</div>
</div>
</section>
-->
<!--<section id="special_issue">
<div class="container-fluid">
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<div class="col-lg-8 mx-auto">
<h2>Post-conference publication</h2>
<p class="text-justify lead">
The papers accepted to the workshop's last edition CMLS 2022, will be published within the Springer
volume
as per the usual tradition of the ER conference joint events (see last year's <a
href="https://link.springer.com/book/10.1007/978-3-030-65847-2">Advances in Conceptual
Modeling 2021</a>).
<br>
In addition, they will be invited to submit a revised and extended version
for a post-conference supplement in the journal
<a href="https://bmcbioinformatics.biomedcentral.com/" target="_blank"><b>BMC Bioinformatics</b></a>
or a similar venue (e.g., <a href="https://bmcmedinformdecismak.biomedcentral.com/" target="_blank"><b>BMC
Medical Informatics and Decision Making</b></a>),
depending on the topic.
</p>
<p>
The authors of accepted papers interested in submitting an extended article to a BMC
supplement will need to fill, sign, scan and submit the supplement submission letter of
interest.
This document is important for us so we can know how many extended articles we will receive.
<br>
The authors can read the BMC Bioinformatics guidelines <a
href="https://bmcbioinformatics.biomedcentral.com/submission-guidelines"
target="_blank">here</a> and the BMC Medical Informatics and
Decision Making guidelines <a
href="https://bmcmedinformdecismak.biomedcentral.com/submission-guidelines"
target="_blank">here</a>.
There are no page limits for the BMC journals.
The articles can be submitted on the <a hred="https://www.editorialmanager.com/supp/"
target="_blank">BMC Supplements website</a>.
<br>
The submitted extended articles will go through two review phases.
In the first phase, the organizers of the CMLS 2022 workshop will serve as guest editors.
Some additional colleagues might be involved as additional guest editors, in case of high number of
submissions.
At the end of the first review phase, the guest editors will recommend the submitted extended
articles for acceptance or rejection,
and transfer them to the BMC journals' editor-in-chiefs who will take care of the second review
phase.
<br>
The BMC editor-in-chiefs can decide to confirm the guest editors' recommendations or to start a new
review phase (with new reviewers invited, new reviews, new requests, etc).
The BMC editor-in-chief will eventually make the final decision on the acceptance or rejection of
each extended manuscript.
<br>
Please note that, even if the guest editors suggest the acceptance for a specific paper, the BMC
editor-in-chief can still decide to reject it (this case is quite rare but it can still happen).
<br>
Deadline. Submission of extended articles for the BMC supplements: 20 December 2022.
</p>
</div>
</div>
</div>
</section>-->
<section id="dates">
<div class="container-fluid">
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<div class="col-lg-8 mx-auto">
<h2>Important dates</h2>
<p class="lead">
<ul class="lead">
<li>Paper submission: <strike>August 2nd, 2023</strike> <b>August 9th, 2023 (extended!)</b></li>
<li>Notification: <strike>September 8th, 2023</strike></li>
<li>Camera-ready version: <strike>September 15th, 2023</strike></li>
<li>CMLS <b>online</b> workshop date: November 6th, 2023</li>
<!-- <li>ER conference dates: November 6-9th, 2023</li>-->
<!--<li>Extended article submission to BMC Bioinformatics supplements: December 20th, 2022</li>-->
</ul>
</p>
</div>
</div>
</div>
</section>
<!--<section id="registration">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Registration</h2>
<p class="lead">
The registration for the workshop is open via the <a
href="https://er2020.big.tuwien.ac.at/registration/">ER website</a>.
At least one of the authors for each accepted paper must have an "Author Registration" (registration
fee of € 150,-.)
and attend the online conference for paper presentation.
</p>
</div>
</div>
</div>
</section>-->
<section id="organizers">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Organizers</h2>
<p class="lead">
<div class="row">
<div class="col-md-4 d-flex justify-content-center">
<a href="https://annabernasconi.faculty.polimi.it/"><img src="imgs/anna2022.JPG"
alt="annabernasconi"
width="240"></a><br>
</div>
<div class="col">
<b>Anna Bernasconi</b>, Dipartimento di Elettronica, Informazione e Bioingegneria (DEIB)
<br>Politecnico di Milano, Italy
<br>anna.bernasconi@polimi.it
</p>
<p class="text-justify">
Anna Bernasconi is a Research Fellow in the Department of Electronics, Information, and
Bioengineering also at Politecnico di Milano. Her research focuses on conceptual modeling,
data integration, semantic web, and biological data analysis. Since the COVID-19 pandemic,
her research has moved to viral genomics, by building models, databases, and Web search
systems for viral sequences and their variants. She co-organized and chaired the first three
International Workshops on Conceptual Modeling for Life Sciences (CMLS 2020 / 2021 / 2022)
co-located with the ER conference and co-organized the First International Workshop on Web
Applications for Life Sciences (WALS 2022) co-located with the ICWE conference.
<p>
</div>
</div>
<br><br>
<!-- <p class="lead">
<div class="row">
<div class="col-md-4 d-flex justify-content-center">
<a href="https://scholar.google.com/citations?user=mb8ggU8AAAAJ"><img src="imgs/arif2020.jpg"
alt="arifcanakoglu"
width="240"></a><br>
</div>
<div class="col">
<b>Arif Canakoglu</b>,
Dipartimento di Anestesia, Rianimazione ed Emergenza-Urgenza,
<br>Fondazione IRCCS Ca’ Granda Ospedale Maggiore Policlinico, Milan, Italy
<br>arif.canakoglu@policlinico.mi.it
</p>
<p class="text-justify">
Arif Canakoglu currently works as a data scientist at Policlinico di Milano; and he works
mainly on the electronic health record of the intensive care unit's patients in the Lombardy
region. He is leading the research with the support of the medical group, analyzing the life
quality of the patients after the hospital discharge. Previously, he was involved in the
"Data-driven Genomic Computing" ERC Awarded project (2016-2021), where he contributed to
developing integration of heterogeneous genomic data and for developing computational
methods for genomic applications. In 2016, he received his PhD on biomolecular knowledge
data integration by using the modular schema data warehouse. His research interests include
data integration and data driven genomic computing, big data analysis and processing on
cloud computing, artificial intelligence applications. His main areas of expertise are
heterogeneous data integration and data driven models and machine learning approaches in
genomic, and big data processes, especially on cloud computing.
</p>
</div>
</div>
<br><br> -->
<p class="lead">
<div class="row">
<div class="col-md-4 d-flex justify-content-center">
<img src="imgs/alberto2023.jpeg" alt="albertogarcias" width="240"><br>
</div>
<div class="col">
<b>Alberto García S.</b>, Research Center on Software Production Methods (PROS)
<br>Universitat Politècnica de València, Spain
<br>algarsi3@pros.upv.es
</p>
<p class="text-justify">
Alberto García S. obtained his Ph.D. cum laude at Universitat Politecnica de Valencia under
the supervision of Prof. Oscar Pastor. He is currently a researcher at the VRAIN research
institute, where he focuses on conceptual modeling, data science, and User Interface design.
He has participated in multiple research projects in collaboration with clinicians and
geneticists to generate knowledge from genomics data effectively and efficiently.
</p>
</div>
</div>
<br><br>
<p class="lead">
<div class="row">
<div class="col-md-4 d-flex justify-content-center">
<img src="imgs/jose2023.png" alt="josereyes" width="240"><br>
</div>
<div class="col">
<b>José Fabián Reyes Román</b>, Research Center on Software Production Methods (PROS)
<br>Universitat Politècnica de València, Spain
<br>jreyes@pros.upv.es
<p class="text-justify">
José F. Reyes R. is a researcher at PROS Research Center at Universitat Politècnica de
València
(Spain).
He holds a Ph.D. in Computer Sciences (2018) from Universitat Politècnica de València (UPV,
Spain),
a MSc in Software Engineering, Formal Methods and Information Systems (2013) from UPV
(Spain),
a Diplomate of Analysts and Systems Designers (2011) and a University Degree in System
Engineering
(2010)
from Universidad Central del Este (Dominican Republic).
Currently, his main research activities are centered on the use of Conceptual Models for the
development of Genomic Information Systems (GeIS).
His main research interests include Conceptual Modeling, Genomic Data Science, Engineering
Requirements, SE and Information Systems.
</p>
</div>
</div>
</div>
</section>
<section id="committee">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Program Committee (in progress)</h2>
<p class="lead">
<ul class="lead">
<!-- <li>Samuele Bovo, University of Bologna, Italy</li> -->
<li>Bernardo Breve, Università degli Studi di Salerno, Italy</li>
<li>Raffaele Calogero, University of Turin</li>
<li>Stefano Ceri, Politecnico di Milano</li>
<!-- <li>Pietro Cinaglia, Magna Graecia University, Italy</li> -->
<li>Stefano Cirillo, Università degli Studi di Salerno, Italy</li>
<li>Tommaso Dolci, Politecnico di Milano</li>
<!-- <li>Johann Eder, University of Klagenfurt, Germany</li> -->
<!-- <li>Jose Luis Garrido, University of Granada, Spain</li> -->
<li>Giovanni Giachetti, Universitat Politècnica de València, Spain</li>
<!-- <li>Giancarlo Guizzardi, University of Twente, Netherlands</li> -->
<!-- <li>Francesco Invernici, Politecnico di Milano</li> -->
<!-- <li>Sergio Lifschitz, Pontifical Catholic University of Rio de Janeiro, Brazil</li> -->
<!-- <li>Roman Lukyanenko, HEC Montreal</li> -->
<!-- <li>Giovanni Meroni, Technical University of Denmark</li> -->
<!-- <li>Paolo Missier, Newcastle University, United Kingdom</li> -->
<li>José Palazzo, Federal University of Rio Grande do Sul, Brazil</li>
<li>Ignacio Panach, University of Valencia, Spain</li>
<li>Oscar Pastor, Universitat Politècnica de València</li>
<li>Barbara Pernici, Polytechnic University of Milan, Italy</li>
<!-- <li>Pietro Pinoli, Politecnico di Milano</li> -->
<!-- <li>Rosario Michael Piro, Polytechnic University of Milan, Italy</li> -->
<li>Tiago Prince Sales, University of Twente, The Netherlands</li>
<li>Monjoy Saha, National Cancer Institute, USA</li>
<li>Veda Storey, Georgia State University, USA</li>
<li>Juan Carlos Trujillo, University of Alicante, Spain</li>
<!-- <li>Domenico Vito, Università degli Studi di Pavia, Italy</li> -->
<!-- <li>Emanuel Weitschek, Uninettuno University, Italy</li> -->
</ul>
<!--
<li>Giuseppe Agapito, Magna Graecia University, Italy</li>
<li>Mario Cannataro, Magna Graecia University, Italy</li>
<li>Matteo Chiara, University of Milan</li>
<li>Carlos Íñiguez-Jarrín, National Polytechnic School</li>
<li>Alberto H. F. Laender, Universidade Federal de Minas Gerais</li>
<li>Sudha Ram, University of Arizona</li>
-->
</p>
</div>
</div>
</div>
</section>
<!--<section id="accepted">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Accepted papers</h2>
<p class="text-justify lead">
This is the list of accepted papers for CMLS 2023:</p>
<ul class="lead">
<li>Yasmine Anchén, Edelweis Rohrer and Regina Motz. <i>An ontology for breast cancer screening.</i>
</li>
<li>Sipan Arevshatyan, José Reyes and Oscar Pastor.<i>Integrating Nuclear Medicine and Radiopharmacy
Data: A Conceptual Model for Precision Medicine and Enhanced Patient Care.</i></li>
<li>Lidia Contreras-Ochando, Ana León, Lluís F. Hurtado, Ferran Pla and Encarna Segarra.<i>Enhancing
Precision Medicine: An Automatic Pipeline Approach for Exploring Genetic Variant-Disease
Literature.</i></li>
<li>Mireia Costa, Alberto García, Ana León and Oscar Pastor.<i>Comprehensive Representation of
Variation Interpretation Data via Conceptual Modeling.</i></li>
</ul>
</div>
</div>
</div>
</section>-->
<section id="collaborations">
<div class="container-fluid">
<div class="row">
<div class="col-lg-8 mx-auto">
<h2>Collaborations</h2>
This workshop is supported by the data-driven Genomic Computing group at Politecnico di Milano
and by the VRAIN Research Center at Universitat Politecnica de Valencia (INNEST/2021/57 - Agència
Valenciana de la Innovació and PDC2021-121243-I00 - Spanish State Research Agency)
<p class="lead">
<a href="http://polimi.it/"><img src="imgs/polimi_white.jpg" alt="Logo CMLS" width="240"></a>
<a href="http://www.bioinformatics.deib.polimi.it/geco/" target="_blank"><img
src="imgs/geco_name.png"
alt="Logo GeCo"
width="170"
class="mr-4"></a>
<a href="http://www.upv.es/"><img src="imgs/upv_white.png" alt="Logo UPV" width="140" class="mr-4"></a>
<a href="http://www.pros.webs.upv.es/"><img src="imgs/pros.png" alt="Logo PROS" width="220"></a>
</p>
</div>
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