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ci: install lme4 via R, not via Python
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paulmueller committed Sep 13, 2024
1 parent 5781b59 commit 0300e32
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions .github/workflows/check.yml
Original file line number Diff line number Diff line change
Expand Up @@ -45,16 +45,17 @@ jobs:
uses: r-lib/actions/setup-r@v2
with:
r-version: '4.1.2'
- name: print R version
- name: Install R packages for lme4
if: matrix.extras == 'all'
shell: bash
run: R --version
run: |
R --version
R -e "install.packages(c('statmod','nloptr','lme4'),repos='http://cran.rstudio.org')"
- name: Install dclab with all possible dependencies
if: matrix.extras == 'all'
run: |
pip install -e .[all]
pip install -r tests/requirements.txt
python -c "from dclab.lme4 import rsetup; rsetup.require_lme4()"
- name: Install dclab with DCOR dependencies
if: matrix.extras == 'dcor-s3'
run: |
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