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Issues list

GPU version doesn't see MIG instances?
#1618 opened Feb 20, 2025 by gwct
Error running cactus over a VM
#1616 opened Feb 16, 2025 by fgualdr
cactus-pangenome inconsistent alignments in genic region between different runs
#1613 opened Feb 12, 2025 by avril-m-harder
Cactus Fails with “Not Enough Memory” on 12-species Alignment (SLURM, Toil)
#1611 opened Feb 12, 2025 by cs1890
2
'run_lastz' failure
#1610 opened Feb 12, 2025 by francicco
2
Question Regarding Alignment Issue in Cactus-Pangenome (Cactus v2.9.3)
#1609 opened Feb 11, 2025 by zhangyehao
2
Inconsistent Genome Representation in Graph Construction: Variants Concentrated on a Single Chromosome
#1608 opened Feb 11, 2025 by HuangYihang1222
2
How does Cactus infer the sequence states of ancestral nodes?
#1607 opened Feb 8, 2025 by bighawkin
1
Reference scaffold not found in final pangenome + question about filtering
#1605 opened Feb 7, 2025 by SimonaSecomandi
4
feature request - add types to VCF
#1604 opened Feb 3, 2025 by colindaven
2
Inquiry Regarding Failed Jobs in Cactus Pangenome Workflow
#1603 opened Jan 31, 2025 by jinhua2024
How to handle the gaps in the maf comparison block？
#1596 opened Jan 24, 2025 by helloworldABCD1234
1
Problems with cactus-update-prepare
#1595 opened Jan 22, 2025 by mufernando
3
How to re-run the job?
#1592 opened Jan 21, 2025 by Windyxia11
4
Ancestor node sequence question
#1591 opened Jan 21, 2025 by bighawkin
4
Handling different types of sex chromosomes
#1589 opened Jan 16, 2025 by finn314
1
There are many comparison blocks in the maf file, why can't we merge them into one very long comparison block？
#1586 opened Jan 14, 2025 by helloworldABCD1234
1
An abnormal VCF file.
#1585 opened Jan 10, 2025 by majssssa
2
Requesting memory issue
#1584 opened Jan 7, 2025 by francicco
3
Calculate phastCons
#1583 opened Jan 7, 2025 by laurafabre
1
soft mask genome is necessary？
#1579 opened Jan 4, 2025 by bighawkin
2
Recommend tools for joint-calling from multiple vcf files after "vg call"
#1577 opened Jan 1, 2025 by shin0727
1
How to determine the running time and if the jobs are going on correctly？
#1576 opened Dec 31, 2024 by Windyxia11
1
cactus-pangenome error in clip_vg step (gfaffix?)
#1573 opened Dec 30, 2024 by dirkjanvw
2
Issues related to the application of cactus in plant genome alignment?
#1572 opened Dec 23, 2024 by Yolanda1201
2
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