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Issues list

Refactor common code
#118 opened Jan 30, 2025 by gdevenyi
Check for required programs in all pipelines
#117 opened Jan 30, 2025 by gdevenyi
Use more variables
#116 opened Jan 29, 2025 by gdevenyi
Store jobs/logs for twolevel-dbm in a different directory than dbm.sh
#115 opened Jan 29, 2025 by gdevenyi
twolevel_modelbuild.sh don't allow mixed starting-target and firstlevel-starting-target options.
#114 opened Jan 28, 2025 by gdevenyi
twolevel-dbm is missing final target mode
#112 opened Sep 12, 2024 by gdevenyi
Add shape-update-method option
#111 opened Aug 22, 2024 by gdevenyi
Implement per-stage average option
#110 opened Jul 29, 2024 by gdevenyi
Matrix/Transforms info
#104 opened Jun 16, 2024 by gdevenyi
Steal shape-updating from OMM-1
#99 opened Jan 3, 2024 by gdevenyi
Parallelize IO in python
#94 opened Oct 6, 2023 by gdevenyi
Implement streaming median/MAD implementation
#92 opened Oct 6, 2023 by gdevenyi
1
Add "launch detail" first info line
#89 opened Sep 6, 2023 by gdevenyi
Implement robust mode of mincbigaverage
#87 opened Aug 28, 2023 by gdevenyi
Improve file existence checking
#81 opened Aug 14, 2023 by gdevenyi
Implement robust options for averaging warps
#76 opened Jun 9, 2023 by gdevenyi
Do away with voxel-wise affine Jacobians
#74 opened May 1, 2023 by gdevenyi
3
Investigate alternative average-transform shape update
#73 opened May 1, 2023 by gdevenyi
Investigate SmoothDisplacementField vs SmoothImage for Jacobians
#72 opened Apr 20, 2023 by gdevenyi
Handle slightly malformed CSVs bug Something isn't working
#59 opened Dec 19, 2022 by gdevenyi
1
Move sharpening to last step of average/shape update
#58 opened Dec 17, 2022 by gdevenyi
Properly handle verbose everywhere
#57 opened Dec 17, 2022 by gdevenyi
Produce comprehensive QC images
#56 opened Nov 10, 2022 by gdevenyi
1
Add code to save the input file
#53 opened Aug 17, 2022 by gdevenyi
"Clean up" mode
#47 opened Jul 25, 2022 by araikes
3
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