1DCODE-bench-cluster.xml

<?xml version="1.0" encoding="UTF-8"?>
<jube>
  <benchmark name="CPU_speedup" outpath="bench_deepcpu">
    <comment>Benchmark of the 1DCODE-paper on the DEEP Cluster CPU, Intel Xeon Sandy Bridge</comment>
    
    <!-- Configuration -->
    <parameterset name="param_set">
      <parameter name="submit_cmd"            >qsub</parameter>
      <parameter name="ready_file"            >ready</parameter>
      <parameter name="job_script"            >job.pbs</parameter>
      <parameter name="job_nodetype"          >cluster</parameter>
      <parameter name="job_name"              >1D-SB</parameter>
      <parameter name="job_ppn" type="int"    >16</parameter>
      <parameter name="job_err"               >stderr</parameter>
      <parameter name="job_out"               >stdout</parameter>
      <parameter name="job_srcname"           >va1D1V</parameter>
      <parameter name="job_input"             >Case01.inp</parameter>
      <parameter name="job_afinity"           >OMP_PROC_BIND=CLOSE</parameter>
      <parameter name="job_nthread" type="int">1,2,4,8,16</parameter>
      <parameter name="precision"             >SP,DP</parameter>
      <parameter name="extension"             >intel64</parameter>
    </parameterset>
    
    <!-- Files -->
    <fileset name="files">
      <copy>${job_input}</copy>
      <copy>${job_srcname}-${precision}.${extension}</copy>
      <copy>${job_script}</copy>
    </fileset>
    
    <!-- Substitute -->
    <substituteset name="subsjob">
      <iofile in="${job_script}" out="${job_script}.run" />
      <sub source="#NAME#"       dest="${job_name}.${job_nthread}" />
      <sub source="#OUTFILE#"    dest="$job_out" />
      <sub source="#ERRFILE#"    dest="$job_err" />
      <sub source="#PPN#"        dest="$job_ppn" />
      <sub source="#NODETYPE#"   dest="$job_nodetype" />
      <sub source="#NUMTHREADS#" dest="$job_nthread" />
      <sub source="#EXEC#"       dest="./${job_srcname}-${precision}.${extension}" />
      <sub source="#AFINITY#"    dest="${job_afinity}" />
      <sub source="#INPUT#"      dest="${job_input}" />
      <sub source="#READY#"      dest="$ready_file" />
    </substituteset>

    <!-- Regex pattern -->
    <patternset name="pattern">
      <pattern name="number_pat" type="float">Loop time: $jube_pat_fp s</pattern>
    </patternset>

    <!-- Operation -->
    <step name="submit">
      <use>param_set</use>    <!-- use existing parameterset -->
      <use>files</use>        <!-- use existing fileset -->
      <use>subsjob</use>      <!-- use existing substituteset -->
      <do done_file="${ready_file}">${submit_cmd} ${job_script}.run</do>
    </step>    

    <!-- Analyse -->
    <analyser name="analyse">
      <use>pattern</use> <!-- use existing patternset -->
      <analyse step="submit">
        <file>stdout</file> <!-- file which should be scanned -->
      </analyse>
    </analyser>

    <!-- Create result table -->
    <result>
      <use>analyse</use> <!-- use existing analyser -->
      <table name="result" style="pretty" sort="precision,job_nthread">
        <column>precision</column>
        <column>job_nthread</column>
        <column>number_pat_max</column>
        <column>number_pat_min</column>
        <column>number_pat_avg</column>
      </table>
    </result>

  </benchmark>
</jube>