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1. Deep-MI/LIT Deep-MI/LIT Public

   FastSurfer Lesion Inpainting Tool (FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface reconstruction in the presence of tumor, surgical cavities or other a…

   Python 7 2

2. Deep-MI/head-motion-from-MRI Deep-MI/head-motion-from-MRI Public

   Code for the paper "Estimating Head Motion from MRI", which predicts motion scores directly from MRI images.

   Python 4 2

3. Deep-MI/head-motion-tools Deep-MI/head-motion-tools Public

   Python 2

4. Deep-MI/FastSurfer Deep-MI/FastSurfer Public

   PyTorch implementation of FastSurferCNN

   Jupyter Notebook 509 130

5. How to run freesurfer inside a pytho... How to run freesurfer inside a python script

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   import shlex

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   import subprocess

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   import sys

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   def which(program):

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       def is_exe(fpath):

6. launch_processes.py launch_processes.py

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   import argparse

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   import subprocess

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   import time

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   import sys

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   import select