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@CityUHK-CompBio

CUHK-TransGen

For GitHub-related matters, please contact yinghanzhang@cuhk.edu.hk

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  1. DeepCC DeepCC Public

    DeepCC: a novel deep learning-based framework for cancer molecular subtype classification

    R 20 17

  2. HTSanalyzeR2 HTSanalyzeR2 Public

    HTSanalyzeR2: A R package for gene set enrichment and network analysis of various high-throughput data

    R 14 5

  3. PAGnet_code PAGnet_code Public

    Code of PAGnet

    R 3

  4. TNBCSE_code TNBCSE_code Public

    code used for the data analysis of TNBC super-enhancer project

    3

  5. CityUHK-CompBio.github.io CityUHK-CompBio.github.io Public

    HTML

  6. deepcc_online deepcc_online Public

    HTML 1

Repositories

Showing 10 of 21 repositories
  • Lab-Rules Public

    The Code Management Policy, Standard Operating Procedures, and Server Information that the Laboratory Must Comply With.

    CityUHK-CompBio/Lab-Rules’s past year of commit activity
    0 0 0 0 Updated Mar 6, 2025
  • 3Diso-TransFold Public

    A transcriptome-translatome-protein structure prediction pipeline

    CityUHK-CompBio/3Diso-TransFold’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 26, 2025
  • TS-SNAD Public Forked from sssyyycuhk/TS-SNAD
    CityUHK-CompBio/TS-SNAD’s past year of commit activity
    Shell 0 1 0 0 Updated Feb 12, 2025
  • isoseq2orf Public Forked from siegmundwang/isoseq2orf

    Pipeline to convert long-read sequencing data to a representative transcriptome for a cancer type and perform primary sequence characterization of the novel ORFs.

    CityUHK-CompBio/isoseq2orf’s past year of commit activity
    Shell 0 MIT 1 0 0 Updated Feb 12, 2025
  • MSCRCclassifier Public Forked from Carpentierbio/MSCRCclassifier
    CityUHK-CompBio/MSCRCclassifier’s past year of commit activity
    R 0 1 0 0 Updated Jan 10, 2025
  • ESCC_CMS Public

    This repository contains the primary code for the ESCC_CMS project, focusing on research and analysis related to Esophageal Squamous Cell Carcinoma (ESCC)

    CityUHK-CompBio/ESCC_CMS’s past year of commit activity
    0 0 0 0 Updated Dec 20, 2024
  • CMSPlus Public Forked from yswutan/CMSPlus
    CityUHK-CompBio/CMSPlus’s past year of commit activity
    R 0 1 0 0 Updated Oct 15, 2024
  • OV-lncRNA Public

    All code used for the data analysis of OV-lncRNA project

    CityUHK-CompBio/OV-lncRNA’s past year of commit activity
    0 0 0 0 Updated May 13, 2024
  • GC-MIR200CHG Public

    Major code used for the data analysis of GC-MIR200CHG project

    CityUHK-CompBio/GC-MIR200CHG’s past year of commit activity
    0 0 0 0 Updated Oct 28, 2023
  • DeepCC Public

    DeepCC: a novel deep learning-based framework for cancer molecular subtype classification

    CityUHK-CompBio/DeepCC’s past year of commit activity
    R 20 MIT 17 2 0 Updated Dec 1, 2021
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