DESCRIPTION

Package: metagene
Version: 2.25.1
Date: 2017-10-13
Title: A package to produce metagene plots
Author: Charles Joly Beauparlant 
	<charles.joly-beauparlant@crchul.ulaval.ca>, Fabien Claude Lamaze 
	<fabien.lamaze.1@ulaval.ca>, Rawane Samb <rawane.samb.1@ulaval.ca>, 
        Cedric Lippens <lippens.cedric@protonmail>,
	Astrid Louise Deschenes <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca> 
	and Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>.
Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>
Description: This package produces metagene plots to compare the behavior of
    DNA-interacting proteins at selected groups of genes/features. Bam files
    are used to increase the resolution. Multiple combination of group of bam
    files and/or group of genomic regions can be compared in a single analysis.
    Bootstraping analysis is used to compare the groups and locate regions with
    statistically different enrichment profiles.
biocViews: ChIPSeq, Genetics, MultipleComparison, Coverage, Alignment,
    Sequencing
License: Artistic-2.0  | file LICENSE
LazyData: true
BugReports: https://github.com/CharlesJB/metagene/issues
VignetteBuilder: knitr
Depends:
    R (>= 3.5.0),
    R6 (>= 2.0),
    GenomicRanges,
    BiocParallel
Imports:
    rtracklayer,
    gplots,
    tools,
    GenomicAlignments,
    GenomeInfoDb,
    GenomicFeatures,
    IRanges,
    ggplot2,
    muStat,
    Rsamtools,
    matrixStats,
    purrr,
    data.table,
    magrittr,
    methods,
	utils, 
	ensembldb,
	EnsDb.Hsapiens.v86,
	stringr
Suggests:
    BiocGenerics,
    similaRpeak,
    RUnit,
    knitr,
    BiocStyle,
    rmarkdown,
    similaRpeak
RoxygenNote: 6.0.1