#42 Regenerate README.

Calvagone · Sep 11, 2024 · 2532d25 · 2532d25
1 parent f2502bb
commit 2532d25
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Showing 5 changed files with 4 additions and 9 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -20,6 +20,7 @@ Imports:
     ggplot2,
     ggrepel,
     plyr,
+    progressr,
     purrr,
     rlang,
     tibble,
@@ -28,7 +29,6 @@ Suggests:
     devtools,
     knitr,
     pkgdown,
-    progressr,
     rmarkdown,
     roxygen2,
     testthat,

diff --git a/NAMESPACE b/NAMESPACE
@@ -44,4 +44,6 @@ exportClasses(sensitivity_analysis_item)
 exportClasses(sensitivity_analysis_items)
 importFrom(assertthat,assert_that)
 importFrom(plyr,is.formula)
+importFrom(progressr,with_progress)
+importFrom(progressr,without_progress)
 importFrom(rlang,as_function)
diff --git a/R/oat_analysis.R b/R/oat_analysis.R
@@ -121,6 +121,7 @@ outfunNCA <- function(metric, x) {
 }
 
 #' @rdname prepare
+#' @importFrom progressr with_progress without_progress
 setMethod("prepare", signature=c("oat_analysis"), definition=function(object) {
   # Fix IIV, VARCOV_OMEGA, VARCOV_SIGMA at the beginning!
   # This way, calling disable is not needed in the scenarios

diff --git a/README.Rmd b/README.Rmd
@@ -32,10 +32,6 @@ This model contains:
 # Configure hardware
 settings <- Settings(Hardware(cpu=8, replicate_parallel=TRUE))
 dest <- "mrgsolve" # Much faster than RxODE
-
-# Progress bar
-options(progressr.enable=TRUE)
-handlers(campsis::campsis_handler())
 ```
 
 

diff --git a/README.md b/README.md
@@ -84,10 +84,6 @@ This model contains:
 # Configure hardware
 settings <- Settings(Hardware(cpu=8, replicate_parallel=TRUE))
 dest <- "mrgsolve" # Much faster than RxODE
-
-# Progress bar
-options(progressr.enable=TRUE)
-handlers(campsis::campsis_handler())
 ```
 
 ### Effect of metabolism effect and weight on model parameters