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@CRI-iAtlas

CRI iAtlas

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  1. shiny-iatlas shiny-iatlas Public

    An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app

    R 48 12

  2. ImmuneSubtypeClassifier ImmuneSubtypeClassifier Public

    An R package for classification of immune subtypes, in cancer, using gene expression data.

    R 46 21

  3. iatlas-app iatlas-app Public

    R Shiny app for CRI iAtlas, an interactive web portal for exploring immuno-oncology data. (iAtlas portal 2022 and beyond)

    R 13 3

  4. iatlas-workflows iatlas-workflows Public

    cwl workflows for public tools

    Common Workflow Language 2 4

  5. iatlas-notebooks iatlas-notebooks Public

    Collection of R notebooks to enable local iAtlas plotting and functionality.

    Jupyter Notebook 2 1

  6. shiny-heatmap-viewer shiny-heatmap-viewer Public

    R 1

Repositories

Showing 10 of 28 repositories
  • R 0 0 2 0 Updated Apr 7, 2025
  • iatlas-app Public

    R Shiny app for CRI iAtlas, an interactive web portal for exploring immuno-oncology data. (iAtlas portal 2022 and beyond)

    R 13 3 22 0 Updated Feb 3, 2025
  • R 0 1 4 0 Updated Jan 22, 2025
  • ImmuneSubtypeClassifier Public

    An R package for classification of immune subtypes, in cancer, using gene expression data.

    R 46 21 10 0 Updated Dec 18, 2024
  • R 0 1 0 0 Updated Dec 17, 2024
  • iAtlasSchema Public

    The data model schema for the iAtlas database

    0 0 1 0 Updated Oct 8, 2024
  • iatlas-notebooks Public

    Collection of R notebooks to enable local iAtlas plotting and functionality.

    Jupyter Notebook 2 1 1 0 Updated Sep 24, 2024
  • R 0 1 0 0 Updated Aug 5, 2024
  • scRNAseq-dev Public

    Code to prepare single-cell RNA-seq datasets for ingress in iAtlas

    Jupyter Notebook 0 0 0 0 Updated Jun 28, 2024
  • nf-pseudobulk Public

    Nextflow pipeline to compute GSEA for pseudobulk scRNAseq

    Nextflow 0 0 0 0 Updated Apr 17, 2024