Cargo.toml

[package]
name = "pufferfish"
version = "0.1.0"
edition = "2021"

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[profile.release]
# Compile with target-cpu=native for fastest performance
opt-level = 3
lto = true
# debug = true

# Even faster flags
debug = false
panic = "abort"

[dependencies]
kmers = { git = "https://github.com/COMBINE-lab/kmers.git" }
clap = { version = ">=3.1.0", features = ["derive"] }
csv = "1.1"
bincode = ">=1.3.3"
delegate = "0.6.2"
log = "0.4"
log4rs = "1.0"
lru = "0.7.3"
rand = ">=0.8.5"
serde_json = ">=1.0"
serde-pickle = ">=1.0"
serde =  {version = ">=1.0", features = ["derive"] }
seq_io = { git = "https://github.com/markschl/seq_io" }
simple-sds = {git = "https://github.com/thejasonfan/simple-sds", branch = "serde_compat"}
# simple-sds = {git = "https://github.com/jltsiren/simple-sds", tag = "v0.3"}
flate2 = ">=1"
criterion = "0.3"

[dev-dependencies]
pretty_assertions = ">=1.1"
quickcheck = ">=1"
quickcheck_macros = ">=1"
criterion = "0.3"

[lib]
# disable cargo bench harness in favor of criterion
bench = false

[[bench]]
name = "bench_wm"
harness = false