diff --git a/src/main/ScriptManager.java b/src/main/ScriptManager.java
index 78fbeac6f..c9b37d623 100755
--- a/src/main/ScriptManager.java
+++ b/src/main/ScriptManager.java
@@ -656,16 +656,16 @@ public void run() {
 					 });
 				}
 			});
-			pnlSeqAnalysis.add(btnDnaShapeBed);
 			
-			JButton btncolorSequencePlot = new JButton("4Color Sequence Plot");
-			btncolorSequencePlot.setToolTipText("Generate 4Color sequence plot given FASTA file and user-defined RGB colors");
-			btncolorSequencePlot.addActionListener(new ActionListener() {
-            public void actionPerformed(ActionEvent e) {
+			JButton btnSearchMotif = new JButton("Search Motif in FASTA");
+			pnlSeqAnalysis.add(btnSearchMotif);
+			btnSearchMotif.setToolTipText("Search a motif in fasta files with mismatch");
+			btnSearchMotif.addActionListener(new ActionListener() {
+				public void actionPerformed(ActionEvent arg0) {
 					EventQueue.invokeLater(new Runnable() {
 						public void run() {
 							try {
-								FourColorSequenceWindow frame = new FourColorSequenceWindow();
+								SearchMotifWindow frame = new SearchMotifWindow();
 								frame.setVisible(true);
 							} catch (Exception e) {
 								e.printStackTrace();
@@ -674,15 +674,16 @@ public void run() {
 					 });
 				}
 			});
+			pnlSeqAnalysis.add(btnDnaShapeBed);
 			
-			JButton btnDnaShapeFasta = new JButton("DNA Shape from FASTA");
-			btnDnaShapeFasta.setToolTipText("Calculate intrinsic DNA shape given input FASTA file");
-			btnDnaShapeFasta.addActionListener(new ActionListener() {
-				public void actionPerformed(ActionEvent arg0) {
+			JButton btncolorSequencePlot = new JButton("4Color Sequence Plot");
+			btncolorSequencePlot.setToolTipText("Generate 4Color sequence plot given FASTA file and user-defined RGB colors");
+			btncolorSequencePlot.addActionListener(new ActionListener() {
+            public void actionPerformed(ActionEvent e) {
 					EventQueue.invokeLater(new Runnable() {
 						public void run() {
 							try {
-								DNAShapefromFASTAWindow frame = new DNAShapefromFASTAWindow();
+								FourColorSequenceWindow frame = new FourColorSequenceWindow();
 								frame.setVisible(true);
 							} catch (Exception e) {
 								e.printStackTrace();
@@ -691,17 +692,15 @@ public void run() {
 					 });
 				}
 			});
-			pnlSeqAnalysis.add(btnDnaShapeFasta);
 			
-			JButton btnSearchMotif = new JButton("Search Motif in FASTA");
-			pnlSeqAnalysis.add(btnSearchMotif);
-			btnSearchMotif.setToolTipText("Search a motif in fasta files with mismatch");
-			btnSearchMotif.addActionListener(new ActionListener() {
+			JButton btnDnaShapeFasta = new JButton("DNA Shape from FASTA");
+			btnDnaShapeFasta.setToolTipText("Calculate intrinsic DNA shape given input FASTA file");
+			btnDnaShapeFasta.addActionListener(new ActionListener() {
 				public void actionPerformed(ActionEvent arg0) {
 					EventQueue.invokeLater(new Runnable() {
 						public void run() {
 							try {
-								SearchMotifWindow frame = new SearchMotifWindow();
+								DNAShapefromFASTAWindow frame = new DNAShapefromFASTAWindow();
 								frame.setVisible(true);
 							} catch (Exception e) {
 								e.printStackTrace();
@@ -710,6 +709,7 @@ public void run() {
 					 });
 				}
 			});
+			pnlSeqAnalysis.add(btnDnaShapeFasta);
 			pnlSeqAnalysis.add(btncolorSequencePlot);