error running jobby

[kelly-sovacool]

run_jobby_on_snakemake_log logfiles/snakemake.log | tee logfiles/snakemake.log.jobby | cut -f2,3,18 > logfiles/snakemake.log.jobby.short
bash: /data/CCBR_Pipeliner/db/PipeDB/Conda/envs/py311/bin/run_jobby_on_snakemake_log: Permission denied
CalledProcessError in file /data/CCBR/projects/ccbr1358/renee_mm10_M25_20240820/workflow/Snakefile, line 241:
Command 'set -euo pipefail;  run_jobby_on_snakemake_log logfiles/snakemake.log | tee logfiles/snakemake.log.jobby | cut -f2,3,18 > logfiles/snakemake.log.jobby.short' returned non-zero exit status 126.
  File "/data/CCBR/projects/ccbr1358/renee_mm10_M25_20240820/workflow/Snakefile", line 241, in __onsuccess
OnSuccess
run_jobby_on_snakemake_log logfiles/snakemake.log | tee logfiles/snakemake.log.jobby | cut -f2,3,18 > logfiles/snakemake.log.jobby.short

jobby failed for @TJoshMeyer within the snakemake worfklow, but works fine when he runs it interactively

[kelly-sovacool]

There seems to be a jobby in the conda env in addition to the one we make available in the ccbrpipeliner module. The one in conda throws this error, while the one in the module works.

[kelly-sovacool]

I removed the jobby scripts in the conda env. Running a test now, output in /data/sovacoolkl/renee_test_latest/

[kelly-sovacool]

fixed by removing them from the conda env, since we are making them available in the ccbrpipeliner module now