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feat: use .walk file in complexity command #10

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@aryarm aryarm commented Feb 5, 2025

very draft, rough as sandpaper, thoroughly untested, needs much refactoring

todo:

  • write more tests to check whether loading from .walk file works the same as loading walks from gfa
  • load node indices as integers instead of strings. will require changing some of the test data
  • write tests to check whether it matters that some walks might pass through a node more than once
  • benchmark and consider whether a different data structure for walks might be better
  • move classes in graph_utils and gbz_utils to data module?

@aryarm aryarm changed the title wip: read walks from .walk in complexity - initial implementation feat: use .walk file in complexity command Feb 5, 2025
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