setup.py

from setuptools import Extension, find_packages, setup

# from Cython.Build import cythonize


def readme():
    with open("README.md") as f:
        return f.read()


# cythonize awesomeness
# ext_modules = ["cana/cutils.pyx", "cana/canalization/cboolean_canalization.pyx"]
extensions = [
    Extension("cana.cutils", ["cana/cutils.c"]),
    Extension(
        "cana.canalization.cboolean_canalization",
        ["cana/canalization/cboolean_canalization.c"],
    ),
]

__package__ = "cana"
__description__ = "This package implements a series of methods used to study control, canalization and redundancy in Boolean networks."
__version__ = "1.0.0"

setup(
    name=__package__,
    version=__version__,
    description=__description__,
    long_description=__description__,
    long_description_content_type="text/plain",
    classifiers=[
        "Development Status :: 4 - Beta",
        "License :: OSI Approved :: MIT License",
        "Programming Language :: Python :: 3",
        "Intended Audience :: Science/Research",
        "Topic :: Scientific/Engineering :: Information Analysis",
    ],
    keywords="boolean networks canalization redundancy dynamical systems computational biology",
    url="http://github.com/rionbr/CANA",
    author="Alex Gates & Rion Brattig Correia",
    author_email="rionbr@gmail.com",
    license="MIT",
    packages=find_packages(),
    package_data={
        "datasets": [
            "cana.datasets/*.txt",
            "cana.datasets/bns/*.cnet",
            "cana.datasets/cell_collective/*.txt",
        ],
    },
    install_requires=[
        "numpy",
        "scipy",
        "networkx",
        "pandas",
        "matplotlib",
        "schematodes>=1.0.0",
        # 'Cython'
    ],
    include_package_data=True,
    zip_safe=False,
    # ext_modules=cythonize(ext_modules, include_path=[''], compiler_directives={'language_level': '3'})  # cython awesomeness
    ext_modules=extensions,
)