From 6f34f9ffb0dedff07e515a43644bc717e25b0967 Mon Sep 17 00:00:00 2001 From: arnaudon Date: Sun, 20 Oct 2024 21:09:04 +0200 Subject: [PATCH 1/3] Fix: Use Bluecellulab load mod wrapper --- emodel_generalisation/cli.py | 1 + 1 file changed, 1 insertion(+) diff --git a/emodel_generalisation/cli.py b/emodel_generalisation/cli.py index d038ea6..099384a 100644 --- a/emodel_generalisation/cli.py +++ b/emodel_generalisation/cli.py @@ -21,6 +21,7 @@ from tqdm import tqdm from voxcell import CellCollection +from bluecellulab.importer import load_mod_files from emodel_generalisation import load_mechanisms from emodel_generalisation.adaptation import adapt_soma_ais from emodel_generalisation.adaptation import build_all_resistance_models From d2930768bff7dbe8a3ab0ef0db726dfd74956552 Mon Sep 17 00:00:00 2001 From: arnaudon Date: Sun, 20 Oct 2024 21:40:12 +0200 Subject: [PATCH 2/3] format --- emodel_generalisation/cli.py | 1 - 1 file changed, 1 deletion(-) diff --git a/emodel_generalisation/cli.py b/emodel_generalisation/cli.py index 099384a..d038ea6 100644 --- a/emodel_generalisation/cli.py +++ b/emodel_generalisation/cli.py @@ -21,7 +21,6 @@ from tqdm import tqdm from voxcell import CellCollection -from bluecellulab.importer import load_mod_files from emodel_generalisation import load_mechanisms from emodel_generalisation.adaptation import adapt_soma_ais from emodel_generalisation.adaptation import build_all_resistance_models From c8ebe955679101a30de343fef8cfbc79084ea533 Mon Sep 17 00:00:00 2001 From: arnaudon Date: Fri, 25 Oct 2024 09:55:25 +0200 Subject: [PATCH 3/3] more --- emodel_generalisation/cli.py | 1 + 1 file changed, 1 insertion(+) diff --git a/emodel_generalisation/cli.py b/emodel_generalisation/cli.py index d038ea6..3cd9c4f 100644 --- a/emodel_generalisation/cli.py +++ b/emodel_generalisation/cli.py @@ -121,6 +121,7 @@ def cli(verbose, no_progress): @click.option("--debug-csv-path", default=None, type=str) @click.option("--only-rin", is_flag=True) @click.option("--mech-path", default=None, type=str) +@load_mod_files def compute_currents( input_path, population_name,