test_trplev.sh

##########test 2 of the DFTOOLS and bash scripts####
echo 'module unload python'

CONFIGCASE="NATL025-GSL301"
dirg='/ccc/scratch//garciagi'

#diri='/ccc/scratch//garciagi/tests'
diri='/ccc/scratch//molines/NATL025' #NATL025-GSL301.001-S/5d/1993'
diro='/ccc/scratch//garciagi/SECTIONS'
dirw='/ccc/work//garciagi/pruebas/test_broke2'
#mkdir ${diri}/testout
##################################################
# For each year, first one year
Y='2005'

## for each month 
M='06'
D='26'
MM='03'
##Copying the necessary files
#ln -sf '/ccc/work/cont003/gen0727/garciagi/pruebas/vt.nc' ${diri}/${CONFIGCASE}.003_y${Y}m${M}d${D}.5d_vt.nc

for Y in $(seq  1993 2012); do

#Y=1999
## for each file 
  cd ${diri}/${CONFIGCASE}.0${MM}-S/5d/${Y}
  mkdir ${diro}/${Y}/${MM}/tempTr
 it=1
 for fileu in $(ls *5d_gridU.nc); do
  #mkdir ${diro}/${Y}/${MM}  
   echo ${fileu}
   ## necessary files
   echo ${it}
   cd ${dirw}

  filev=$(echo ${fileu} | sed "s/gridU/gridV/g")
  filet=$(echo ${fileu} | sed "s/gridU/gridT/g")
  filefx=$(echo ${fileu} | sed "s/gridU/flxT/g")
  fileY=$(echo ${fileu} | sed "s/gridU/Ltrp/g" | sed "s/${CONFIGCASE}/YUC/g")
  fileF=$(echo ${fileu} | sed "s/gridU/Ltrp/g" | sed "s/${CONFIGCASE}/FLO1/g")
  fileF2=$(echo ${fileu} | sed "s/gridU/brokeline/g" | sed "s/${CONFIGCASE}/FLO2/g")
  fileB=$(echo ${fileu} | sed "s/gridU/brokeline/g" | sed "s/${CONFIGCASE}/BAH/g")



## Calcules

  cdftransport -noheat -u ${diri}/${CONFIGCASE}.0${MM}-S/5d/${Y}/${fileu}  -v ${diri}/${CONFIGCASE}.0${MM}-S/5d/${Y}/${filev}  -zlimit 300 500 600 700 800 900 1000 1200  <YC_section.dat

  cp 01_YC_transports.nc ${diro}/${Y}/${MM}/tempTr/${fileY}

  #cp 02_FLORIDA_transports.nc ${diro}/FLORIDA.0${MM}_y${Y}m${M}d${D}.5d_transport.nc
  #cp 03_BAHAMAS_transports.nc ${diro}/BAHAMAS.0${MM}_y${Y}m${M}d${D}.5d_transport.nc 
 it=$((it+1))
 done

 ncrcat ${diro}/${Y}/${MM}/tempTr/YUC.0${MM}*  ${diro}/${Y}/${MM}/tempTr/YC.0${MM}_y${Y}.5d_trp.nc

done