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environment.yml
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name: GCPL
channels:
- https://levinthal:paradox@conda.graylab.jhu.edu
- pytorch
- nvidia
- anaconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- appdirs=1.4.4=pyhd3eb1b0_0
- biopython=1.78=py39h7f8727e_0
- biotite=0.36.1=py39h389d5f1_0
- blas=1.0=mkl
- bottleneck=1.3.5=py39h7deecbd_0
- brotlipy=0.7.0=py39h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2022.12.7=ha878542_0
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.1=py39h5eee18b_3
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- colorama=0.4.6=pyhd8ed1ab_0
- cryptography=39.0.1=py39h9ce1e76_0
- cuda-cudart=11.8.89=0
- cuda-cupti=11.8.87=0
- cuda-libraries=11.8.0=0
- cuda-nvrtc=11.8.89=0
- cuda-nvtx=11.8.86=0
- cuda-runtime=11.8.0=0
- einops=0.6.0=pyhd8ed1ab_0
- ffmpeg=4.3=hf484d3e_0
- fftw=3.3.9=h27cfd23_1
- filelock=3.9.0=py39h06a4308_0
- flit-core=3.8.0=py39h06a4308_0
- freetype=2.12.1=h4a9f257_0
- fsspec=2023.3.0=pyhd8ed1ab_1
- giflib=5.2.1=h5eee18b_3
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py39heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- idna=3.4=py39h06a4308_0
- intel-openmp=2021.4.0=h06a4308_3561
- invariant-point-attention=0.2.2=pyhd8ed1ab_0
- jinja2=3.1.2=py39h06a4308_0
- jpeg=9e=h5eee18b_1
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libcublas=11.11.3.6=0
- libcufft=10.9.0.58=0
- libcufile=1.6.0.25=0
- libcurand=10.3.2.56=0
- libcusolver=11.4.1.48=0
- libcusparse=11.7.5.86=0
- libdeflate=1.17=h5eee18b_0
- libffi=3.4.2=h6a678d5_6
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.2=h7f8727e_0
- libnpp=11.8.0.86=0
- libnvjpeg=11.9.0.86=0
- libpng=1.6.39=h5eee18b_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.5.0=h6a678d5_2
- libunistring=0.9.10=h27cfd23_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- lightning-utilities=0.8.0=pyhd8ed1ab_0
- llvm-openmp=14.0.6=h9e868ea_0
- lz4-c=1.9.4=h6a678d5_0
- markupsafe=2.1.1=py39h7f8727e_0
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py39h7f8727e_0
- mkl_fft=1.3.1=py39hd3c417c_0
- mkl_random=1.2.2=py39h51133e4_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.2.1=py39h06a4308_0
- msgpack-python=1.0.3=py39hd09550d_0
- ncurses=6.4=h6a678d5_0
- nettle=3.7.3=hbbd107a_1
- networkx=2.8.4=py39h06a4308_1
- numexpr=2.8.4=py39he184ba9_0
- numpy=1.23.5=py39h14f4228_0
- numpy-base=1.23.5=py39h31eccc5_0
- openh264=2.1.1=h4ff587b_0
- openssl=1.1.1t=h0b41bf4_0
- packaging=22.0=py39h06a4308_0
- pandas=1.5.2=py39h417a72b_0
- pillow=9.4.0=py39h6a678d5_0
- pip=23.0.1=py39h06a4308_0
- pooch=1.4.0=pyhd3eb1b0_0
- pycparser=2.21=pyhd3eb1b0_0
- pyopenssl=23.0.0=py39h06a4308_0
- pyrosetta=2022.41+release.28dc2a1=py39_0
- pysocks=1.7.1=py39h06a4308_0
- python=3.9.16=h7a1cb2a_2
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python_abi=3.9=2_cp39
- pytorch=2.0.0=py3.9_cuda11.8_cudnn8.7.0_0
- pytorch-cuda=11.8=h7e8668a_3
- pytorch-lightning=2.0.0=pyhd8ed1ab_1
- pytorch-mutex=1.0=cuda
- pytz=2022.7=py39h06a4308_0
- pyyaml=6.0=py39hb9d737c_5
- readline=8.2=h5eee18b_0
- requests=2.28.1=py39h06a4308_1
- scipy=1.10.0=py39h14f4228_0
- setuptools=65.6.3=py39h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.41.1=h5eee18b_0
- sympy=1.11.1=py39h06a4308_0
- tk=8.6.12=h1ccaba5_0
- torchaudio=2.0.0=py39_cu118
- torchmetrics=0.11.4=pyhd8ed1ab_0
- torchtriton=2.0.0=py39
- torchvision=0.15.0=py39_cu118
- tqdm=4.65.0=pyhd8ed1ab_1
- typing_extensions=4.4.0=py39h06a4308_0
- tzdata=2022g=h04d1e81_0
- urllib3=1.26.14=py39h06a4308_0
- wheel=0.38.4=py39h06a4308_0
- xz=5.2.10=h5eee18b_1
- yaml=0.2.5=h7f98852_2
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.2=ha4553b6_0
- pip:
- fvcore==0.1.5.post20221221
- iopath==0.1.10
- joblib==1.2.0
- portalocker==2.7.0
- psutil==5.9.4
- pyg-lib==0.2.0+pt20cu118
- pyparsing==3.0.9
- scikit-learn==1.2.2
- tabulate==0.9.0
- termcolor==2.2.0
- threadpoolctl==3.1.0
- torch-cluster==1.6.1+pt20cu118
- torch-geometric==2.2.0
- torch-scatter==2.1.1+pt20cu118
- torch-sparse==0.6.17+pt20cu118
- torch-spline-conv==1.2.2+pt20cu118
- yacs==0.1.8