Model Quality Assessment

Model quality assessment of protein structures using language models.

weight file

weight file for network:http://zhanglab-bioinf.com/GraphCPLMQA/userResult/GCPL.pkl

weight file for esm_if:https://dl.fbaipublicfiles.com/fair-esm/models/esm_if1_gvp4_t16_142M_UR50.pt

weight file for esm2:https://dl.fbaipublicfiles.com/fair-esm/models/esm2_t33_650M_UR50D.pt

Please copy the corresponding file to the corresponding folder. The GCPL.pkl file is stored in (project-path)/QA_Model. The weight files of esm_if and esm2 are stored in (project-path)/esm-main/esm-pt/

Predict

(project-path)/bin/run_monomer.sh pdb-dir

pdb-dir: This folder contains the pdb files that need to be evaluated.