Enhance adaptive suprathreshold

[t-b]

Close #2258

• Various preparations for adaptive enhancements #2305
• Avoid setting out of range DAScale values #2184
• Fix tests
• Clarify Adaptive enhancements #2258 (comment)
• Remove frequency filtering, see Adaptive enhancements #2258 (comment)
• Add tests for new code, check coverage
• Adapt dashboard (should not be needed)
• Adapt testcase table
• Adapt flowchart
• Raise PSQ_DA_SCALE_VERSION
• Raise labnotebook version

Next round after 7739d31 (PSQ_DS_FitFrequencyCurrentData: Remove it, 2025-01-28):

• Merge SF labnotebook: Fix multiple keys with wildcards #2346
• fix neg pos fillin
• Add new test for neg pos fillin fix
• Merge CI: Update ipt #2347
• Raise PSQ_DA_SCALE_VERSION again
• MinimumSpikeCount, defaults to 4, minimum (>=) number of spikes required to allow a sweep reaching max slope. We look at current SCI and RhSuAd. -> LBN entry
• Use different DAScale when we are done due to RhSuAd data -> neg slope method for DAScale estimation
• Remove invalid slope QC
• Ignore f-I slope QC == NaN for DAScale estimation
• Look into new file

[t-b]

@timjarsky Ready to test.

[t-b]

@timjarsky Investigation of the live testing from 2025-01-28.

H25.26.401.11.53.01.01.pxp

No adaptive data

Sst-IRES-Cre.pxp

34-49:

Passing f-I slope QC and sweep QC on sweeps 46, 48 and 49.

58-75:

Passing f-I slope QC and sweep QC on sweeps 72-74. Tricky to see due to +1 offset.

# sweeps = selsweeps(range(34, 49))
sweeps = selsweeps(range(58, 75))
sel = select(selvis(all), $sweeps , selchannels(AD))
mode = UNKNOWN_MODE
entries = ["USER_DA Scale Sweep QC", "USER_Squ. Pul. Sweep QC", "USER_DA Scale f-I neg. slope QC", "USER_DA Scale f-I slope QC", "USER_DA Scale DAScale values left QC", "USER_*Baseline QC", "USER_DA Scale fillin QC"]

labnotebook(["USER_DA Scale f-I slope QC", "USER_DA Scale Sweep QC"], $sel, $mode)

and

labnotebook($entries, $sel, $mode)

and

labnotebook(["Stim Scale Factor"], select($sel, selsweeps(range(64, 75))), $mode)

and

labnotebook(["*f-I slope"], select($sel, selsweeps(range(64, 75))), $mode)

and

anafuncParam("NumSweepsWithSaturation", $sel)

Sst-IRES-Cre (1).pxp

10-26:

Passing f-I slope QC and sweep QC on sweeps 24, 25 and 26.

37-52:

Passing f-I slope QC and sweep QC on sweeps 49-51.

59-68:

Passed because the inital FI slope was invalid because 2x the same DAScale. ???

83-99:

Passed because

97: f-I slope QC
98: neg f-I slope QC

99 is the pos/neg slope fillin, but it has the wrong DAScale value. ???

# sweeps = selsweeps(range(10, 27))
# sweeps = selsweeps(range(37, 53))
sweeps = selsweeps(range(59, 69))
# sweeps = selsweeps(range(83, 100))

sel = select(selvis(all), $sweeps , selchannels(AD))
mode = UNKNOWN_MODE
entries = ["USER_DA Scale Sweep QC", "USER_Squ. Pul. Sweep QC", "USER_DA Scale f-I neg. slope QC", "USER_DA Scale f-I slope QC", "USER_DA Scale DAScale values left QC", "USER_*Baseline QC", "USER_DA Scale fillin QC", "*BL QC"]

labnotebook(["USER_DA Scale f-I slope QC", "USER_DA Scale Sweep QC", "USER_DA Scale f-I slope valid QC"], $sel, $mode)

and

labnotebook($entries, $sel, $mode)

and

labnotebook("*f-I slope", $sel, $mode)

and

labnotebook("Stim Scale Factor", $sel, $mode)

and

labnotebook("USER_DA Scale AP frequency from*", $sel, $mode)

and

labnotebook("USER_DA Scale f-I slopes from*", $sel, $mode)

and

labnotebook("*operation mode", $sel, $mode)

and

labnotebook("*passing sweep numbers*", $sel, $mode)

and

anafuncParam("NumSweepsWithSaturation", $sel)

Sst-IRES-Cre (2).pxp

18-24:

pos/neg slope on 23 and 24. Missing fillin due to bug. ???

35-44:

passing f-I slope on 42-43 (both from RhSuAd) and 44

# sweeps = selsweeps(range(18, 25))
sweeps = selsweeps(range(35, 45))

sel = select(selvis(all), $sweeps , selchannels(AD))
mode = UNKNOWN_MODE
entries = ["USER_DA Scale Sweep QC", "USER_Squ. Pul. Sweep QC", "USER_DA Scale f-I neg. slope QC", "USER_DA Scale f-I slope QC", "USER_DA Scale DAScale values left QC", "USER_*Baseline QC", "USER_DA Scale fillin QC"]

labnotebook(["USER_DA Scale f-I slope QC", "USER_DA Scale Sweep QC"], $sel, $mode)

and

labnotebook($entries, $sel, $mode)

and

labnotebook("*f-I slope", $sel, $mode)

and

labnotebook("Stim Scale Factor", $sel, $mode)

and

labnotebook("*operation mode*", $sel, $mode)

and

labnotebook("*f-I slope QCs*", $sel, $mode)

and

anafuncParam("NumSweepsWithSaturation", $sel)

Sst-IRES-Cre (3).pxp

44-59:

Sweeps 57 and 58 have f-I neg slope QC. 59 is fillin with wrong dascale ???

74-84:

Passed because the inital FI slope was invalid because 2x the same DAScale. ???

# sweeps = selsweeps(range(43, 60))
sweeps = selsweeps(range(74, 85))

sel = select(selvis(all), $sweeps , selchannels(AD))
mode = UNKNOWN_MODE
entries = ["USER_DA Scale Sweep QC", "USER_Squ. Pul. Sweep QC", "USER_DA Scale f-I neg. slope QC", "USER_DA Scale f-I slope QC", "USER_DA Scale DAScale values left QC", "USER_*Baseline QC", "USER_DA Scale fillin QC", "*f-I initial slope valid from*"]

labnotebook(["USER_DA Scale f-I slope QC", "USER_DA Scale Sweep QC"], $sel, $mode)

and

labnotebook($entries, $sel, $mode)

and

labnotebook("*f-I slope", $sel, $mode)

and

labnotebook("Stim Scale Factor", $sel, $mode)

and

labnotebook("*operation mode*", $sel, $mode)

and

labnotebook("*f-I slope QCs*", $sel, $mode)

and

anafuncParam("NumSweepsWithSaturation", $sel)

[t-b]

H25.03.302.11.53.01.03.pxp:

f-I plot:

sweeps = selsweeps(range(25, 49))
sel = select(selvis(all), $sweeps , selchannels(AD))
mode = UNKNOWN_MODE
entries = ["USER_DA Scale Sweep QC", "USER_Squ. Pul. Sweep QC", "USER_DA Scale f-I neg. slope QC", "USER_DA Scale f-I slope QC", "USER_DA Scale DAScale values left QC", "USER_*Baseline QC", "USER_DA Scale fillin QC"]

labnotebook(["USER_DA Scale f-I slope QC", "USER_DA Scale Sweep QC"], $sel, $mode)

and

labnotebook($entries, $sel, $mode)

and

labnotebook(["Stim Scale Factor"], $sel)

and

labnotebook(["USER_DA Scale AP frequency"], $sel, $mode)

and

anafuncParam("NumSweepsWithSaturation", $sel)