run_MAGMA.md

title	output
Run MAGMA	html_document keep_md true

We can now run MAGMA on the processed intelligence GWAS using the following commands:

cd MAGMA/
int="../../Data/GWAS/Intelligence/sumstats/int.annotated_35kbup_10_down.genes.raw"
cell_type="../MAGMA/top10.txt"
magma --gene-results  $int --set-annot  $cell_type --out int
cd ..