Base feature (#1)

* Base feature
* Update sbt version
* #1 github workflow to build, sbt-header check + github workflow
* #1 headers update (newline) to be compatible with sbt header plugin
* #1 Constants reverted to Enceladus values (test passing and Enceladus-compatiblity), created issue #5 to follow up
* #1 testfix (missing test config, typeName wrapper - typeOf[Boolean].toString returning `Boolean` vs `scala.Boolean` + test
* #1 cleanup, SectionSuite added (originating in Enceladus). `FieldValidationFailure` renamed to `FieldValidationIssue`

* #1 sbt `in` -> `/`
* #1 removed unused test resources
* #1 added header checking for src/test/scala, too. + header NL fixes, build name = small caps,
* #1 assembly removed (plugin + config)
* #1 StructFieldImplicitsSuite added, `StandardizationRerunSuite` renamed to `StandardizationCsvSuite`
* #1 Enceladus#677 changed to #7
* `StdInterpreterSuite` and `StandardizationInterpreterSuite` merged into the latter.
* #1 `StandardizationInterpreterSuite` test fix

Co-authored-by: Daniel Kavan <dk1844@gmail.com>

.editorconfig

@@ -0,0 +1,36 @@
+#
+#  Copyright 2021 ABSA Group Limited
+#
+#  Licensed under the Apache License, Version 2.0 (the "License");
+#  you may not use this file except in compliance with the License.
+#  You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+#  Unless required by applicable law or agreed to in writing, software
+#  distributed under the License is distributed on an "AS IS" BASIS,
+#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#  See the License for the specific language governing permissions and
+#  limitations under the License.
+#
+# top-most EditorConfig file
+root = true
+
+[*]
+charset = utf-8
+end_of_line = lf
+trim_trailing_whitespace = true
+
+[*.xml]
+indent_size = 4
+indent_style = space
+insert_final_newline = true
+
+[*.{java,scala,js,json,css}]
+indent_size = 2
+indent_style = space
+insert_final_newline = true
+max_line_length = 120
+
+[*.md]
+trim_trailing_whitespace = false

.github/workflows/build.yml

@@ -0,0 +1,41 @@
+#
+# Copyright 2021 ABSA Group Limited
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+name: Build
+
+on:
+  push:
+    branches: [ main, develop, master ]
+  pull_request:
+    branches: [ master, develop ]
+    types: [ assigned, opened, synchronize, reopened, labeled ]
+
+jobs:
+  test-sbt:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+    name: SBT Test
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v2
+      - uses: coursier/cache-action@v5
+      - name: Setup Scala
+        uses: olafurpg/setup-scala@v10
+        with:
+          java-version: "adopt@1.8"
+      - name: Build and run tests
+        run: sbt test

.github/workflows/licence_check.yml

@@ -0,0 +1,41 @@
+#
+# Copyright 2021 ABSA Group Limited
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+name: License Check
+
+on:
+  push:
+    branches: [ main, develop, master ]
+  pull_request:
+    branches: [ master ]
+    types: [ assigned, opened, synchronize, reopened, labeled ]
+
+jobs:
+  license-test:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v2
+      - name: Setup Scala
+        uses: olafurpg/setup-scala@v10
+        with:
+          java-version: "adopt@1.8"
+      # note, that task "headerCheck" defaults to just "compile:headerCheck" - see https://github.com/sbt/sbt-header/issues/14
+      - name: SBT src licence header check
+        run: sbt Compile/headerCheck
+      - name: SBT test licence header check
+        run: sbt Test/headerCheck
+

.gitignore

@@ -4,6 +4,7 @@
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.
 # You may obtain a copy of the License at
+#
 #     http://www.apache.org/licenses/LICENSE-2.0
 #
 # Unless required by applicable law or agreed to in writing, software

build.sbt

@@ -0,0 +1,41 @@
+/*
+ * Copyright 2021 ABSA Group Limited
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.00
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+
+ThisBuild / name := "standardization"
+ThisBuild / organization := "za.co.absa"
+ThisBuild / version := "0.0.1-SNAPSHOT"
+ThisBuild / scalaVersion := "2.11.12"
+
+libraryDependencies ++=  List(
+  "org.apache.spark" %% "spark-core" % "2.4.7" % "provided",
+  "org.apache.spark" %% "spark-sql" % "2.4.7" % "provided",
+  "za.co.absa" %% "spark-hats" % "0.2.2",
+  "za.co.absa" %% "spark-hofs" % "0.4.0",
+  "org.scalatest" %% "scalatest" % "3.2.2" % Test,
+  "com.typesafe" % "config" % "1.4.1"
+)
+
+Test / parallelExecution := false
+
+// licenceHeader check:
+
+ThisBuild / organizationName := "ABSA Group Limited"
+ThisBuild / startYear := Some(2021)
+ThisBuild / licenses += "Apache-2.0" -> url("https://www.apache.org/licenses/LICENSE-2.0.txt")
+
+// linting
+Global / excludeLintKeys += ThisBuild / name // will be used in publish, todo #3 - confirm if lint ignore is still needed

project/build.properties

@@ -0,0 +1 @@
+sbt.version=1.5.5

project/plugins.sbt

@@ -0,0 +1 @@
+addSbtPlugin("de.heikoseeberger" % "sbt-header" % "5.6.0")

src/main/resources/reference.conf

@@ -0,0 +1,31 @@
+# Copyright 2021 ABSA Group Limited
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+# Configuration added here is considered the application default and it will be used
+# for keys that are not specified in the provided 'application.conf' or system properties.
+# Here is the precedence of configuration (top ones have higher precedence):
+# 1. System Properties (e.g. passed as '-Dkey=value')
+# 2. application.conf (e.g. provided as '-Dconfig.file=...')
+# 3. reference.conf
+
+# 'enceladus_record_id' with an id can be added containing either true UUID, always the same IDs (row-hash-based) or the
+# column will not be added at all. Allowed values: "uuid", "stableHashId", "none"
+standardization.recordId.generation.strategy="uuid"
+
+# system-wide time zone
+timezone="UTC"
+
+standardization.testUtils.sparkTestBaseMaster="local[4]"
+
+standardization.failOnInputNotPerSchema=false

src/main/scala/za/co/absa/standardization/ArrayTransformations.scala

@@ -0,0 +1,97 @@
+/*
+ * Copyright 2021 ABSA Group Limited
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package za.co.absa.standardization
+
+import org.apache.spark.sql.{Column, Dataset, Row, SparkSession}
+import org.apache.spark.sql.api.java.UDF1
+import org.apache.spark.sql.functions.{callUDF, col, struct}
+import org.apache.spark.sql.types.{ArrayType, DataType, StructType}
+import org.slf4j.LoggerFactory
+import za.co.absa.standardization.schema.SchemaUtils
+
+object ArrayTransformations {
+  private val logger = LoggerFactory.getLogger(this.getClass)
+  def flattenArrays(df: Dataset[Row], colName: String)(implicit spark: SparkSession): Dataset[Row] = {
+    val typ = SchemaUtils.getFieldType(colName, df.schema).getOrElse(throw new Error(s"Field $colName does not exist in ${df.schema.printTreeString()}"))
+    if (!typ.isInstanceOf[ArrayType]) {
+      logger.info(s"Field $colName is not an ArrayType, returning the original dataset!")
+      df
+    } else {
+      val arrType = typ.asInstanceOf[ArrayType]
+      if (!arrType.elementType.isInstanceOf[ArrayType]) {
+        logger.info(s"Field $colName is not a nested array, returning the original dataset!")
+        df
+      } else {
+        val udfName = colName.replace('.', '_') + System.currentTimeMillis()
+
+        spark.udf.register(udfName, new UDF1[Seq[Seq[Row]], Seq[Row]] {
+          def call(t1: Seq[Seq[Row]]): Seq[Row] = if (t1 == null) null.asInstanceOf[Seq[Row]] else t1.filter(_ != null).flatten // scalastyle:ignore null
+        }, arrType.elementType)
+
+        nestedWithColumn(df)(colName, callUDF(udfName, col(colName)))
+      }
+    }
+
+  }
+
+  def nestedWithColumn(ds: Dataset[Row])(columnName: String, column: Column): Dataset[Row] = {
+    val toks = columnName.split("\\.").toList
+
+    def helper(tokens: List[String], pathAcc: Seq[String]): Column = {
+      val currPath = (pathAcc :+ tokens.head).mkString(".")
+      val topType = SchemaUtils.getFieldType(currPath, ds.schema)
+
+      // got a match
+      if (currPath == columnName) {
+        column as tokens.head
+      } // some other attribute
+      else if (!columnName.startsWith(currPath)) {
+        arrCol(currPath)
+      } // partial match, keep going
+      else if (topType.isEmpty) {
+        struct(helper(tokens.tail, pathAcc ++ List(tokens.head))) as tokens.head
+      } else {
+        topType.get match {
+          case s: StructType =>
+            val cols = s.fields.map(_.name)
+            val fields = if (tokens.size > 1 && !cols.contains(tokens(1))) {
+              cols :+ tokens(1)
+            } else {
+              cols
+            }
+            struct(fields.map(field => helper((List(field) ++ tokens.tail).distinct, pathAcc :+ tokens.head) as field): _*) as tokens.head
+          case _: ArrayType => throw new IllegalStateException("Cannot reconstruct array columns. Please use this within arrayTransform.")
+          case _: DataType  => arrCol(currPath) as tokens.head
+        }
+      }
+    }
+
+    ds.withColumn(toks.head, helper(toks, Seq()))
+  }
+
+  def arrCol(any: String): Column = {
+    val toks = any.replaceAll("\\[(\\d+)\\]", "\\.$1").split("\\.")
+    toks.tail.foldLeft(col(toks.head)){
+      case (acc, tok) =>
+        if (tok.matches("\\d+")) {
+          acc(tok.toInt)
+        } else {
+          acc(tok)
+        }
+    }
+  }
+}