Skip to content
@AUMC-HEMA

Amsterdam UMC Hematology Department

Code and resources from the Hematology Department at Amsterdam UMC
README.md 
Amsterdam UMC Hematology Department
┣━━ 📦 Open Source Packages
┃   ┣━━ MSGMM - Multi-sample Gaussian mixture models
┃   ┗━━ CytoTools - Internal R utilities package for cytometry data
┣━━ 🔬 Manuscripts
┃   ┣━━ imputation-manuscript - Imputation of cytometry data (Mocking et al., 2023)
┃   ┣━━ cMRD-manuscript - Computational MRD assessment in AML (Mocking et al., 2024)
┃   ┗━━ cMRD-review - Review of computational MRD assessment in AML (Mocking et al., 2025)
┗━━ 👨‍💻 Contributors
    ┣━━ 👨‍💻 Postdoctoral scientists
    ┃   ┗━━ Costa Bachas - Postdoc
    ┣━━ 👨‍💻 PhD students
    ┃   ┣━━ Tim Mocking - Computational analysis of myeloid malignancies
    ┃   ┣━━ Tom Reuvekamp - Therapy dependent leukemic stem cell dynamics in acute myeloid leukemia
    ┃   ┣━━ Lukas Haaksma - Advanced measurable residual disease modeling in acute myeloid leukemia
    ┃   ┣━━ Kasper Croese - Computational analysis of myeloid malignancies
    ┃   ┗━━ Nils Evander - Drug resistance modeling in acute leukemia
    ┣━━ 👨‍💻 Students
    ┃   ┣━━ Marry Lin - Intern MSc. Biomedical Sciences
    ┃   ┗━━ Felix Zwolle - Intern MSc. Bioinformatics
    ┗━━ 👨‍💻 Alumni
        ┣━━ Eirini Papavasileiou - Intern MSc. Bioinformatics
        ┣━━ Lok Lam Ngai - PhD student
        ┣━━ Jesse Tettero -  PhD student
        ┣━━ Philip Rutten - Postdoc
        ┣━━ Dana Allen - Intern MSc. Bioinformatics
        ┗━━ Yejin Park - Intern MSc. Bioinformatics

Popular repositories Loading

  1. imputation-manuscript imputation-manuscript Public

    This repository contains the code used in our benchmark of imputation tools for flow cytometry data.

    Jupyter Notebook 1

  2. MSGMM MSGMM Public

    The multi-sample Gaussian mixture model (MSGMM) is a clustering model adapted to fitting multiple samples simultaneously using the EM algorithm.

    R 1

  3. CytoTools CytoTools Public

    A small R package containing useful R functions for cytometry data for internal use.

    R 1

  4. cMRD-manuscript cMRD-manuscript Public

    Code used for computational detection of MRD in AML using flow cytometry data.

    Jupyter Notebook 1

  5. .github .github Public

    1

  6. cMRD-review cMRD-review Public

    Jupyter Notebook

Repositories

Showing 6 of 6 repositories
  • .github Public
    AUMC-HEMA/.github’s past year of commit activity
    0 1 0 1 Updated Mar 12, 2025
  • MSGMM Public

    The multi-sample Gaussian mixture model (MSGMM) is a clustering model adapted to fitting multiple samples simultaneously using the EM algorithm.

    AUMC-HEMA/MSGMM’s past year of commit activity
    R 1 0 0 0 Updated Feb 12, 2025
  • cMRD-review Public
    AUMC-HEMA/cMRD-review’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 11, 2024
  • CytoTools Public

    A small R package containing useful R functions for cytometry data for internal use.

    AUMC-HEMA/CytoTools’s past year of commit activity
    R 1 0 0 0 Updated Sep 23, 2024
  • cMRD-manuscript Public

    Code used for computational detection of MRD in AML using flow cytometry data.

    AUMC-HEMA/cMRD-manuscript’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jul 16, 2024
  • imputation-manuscript Public

    This repository contains the code used in our benchmark of imputation tools for flow cytometry data.

    AUMC-HEMA/imputation-manuscript’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 26, 2023

Top languages

Loading…

Most used topics

Loading…