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| name: Generic | ||
| run-name: Run ${{ inputs.recipe-name }} | ||
| on: | ||
| workflow_dispatch, workflow_call: | ||
| inputs: | ||
| recipe-name: | ||
| required: true | ||
| type: string | ||
| jobs: | ||
| run_recipe: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| #- name: Get latest workflow run status | ||
| # uses: actions/github-script@v6 | ||
| # id: latest-workflow-status | ||
| # with: | ||
| # script: | | ||
| # const runs = await github.rest.actions.listWorkflowRuns({ | ||
| # owner: context.repo.owner, | ||
| # repo: context.repo.repo, | ||
| # workflow_id: 'Age_at_the_Bottom.yml', | ||
| # per_page: 2 | ||
| # }) | ||
| # return runs.data.workflow_runs[1].conclusion | ||
| # result-encoding: string | ||
| - name: Run recipe | ||
| uses: appleboy/ssh-action@v0.1.7 | ||
| with: | ||
| host: gadi.nci.org.au | ||
| username: ${{secrets.GADI_USER}} | ||
| key: ${{secrets.DEPLOY_KEY}} | ||
| passphrase: ${{secrets.DEPLOY_KEY_PASSWORD}} | ||
| command_timeout: 2400m | ||
| script: | | ||
| cd ${{secrets.GADI_SCRIPTS_DIR}}/../COSIMA-recipes/jobs | ||
| qsub launch_${{ inputs.recipe-name }}.pbs | ||
| #- name: Get output log | ||
| # if: ${{ failure() || github.event.workflow_run.name == 'Run all recipes' || ( github.event.workflow_run.name == 'Run all failed' && steps.latest-workflow-status.outputs.result != 'success' ) || github.event_name == 'workflow_dispatch' }} | ||
| # uses: nicklasfrahm/scp-action@main | ||
| # with: | ||
| # direction: download | ||
| # host: gadi.nci.org.au | ||
| # username: ${{secrets.GADI_USER}} | ||
| # insecure_ignore_fingerprint: true | ||
| # key: ${{secrets.DEPLOY_KEY}} | ||
| # passphrase: ${{secrets.DEPLOY_KEY_PASSWORD}} | ||
| # source: ${{secrets.GADI_SCRIPTS_DIR}}/../COSIMA-recipes/logs/Age_at_the_Bottom.out | ||
| # target: log.txt | ||
| #- name: Upload log as artifact | ||
| # if: ${{ failure() || github.event.workflow_run.name == 'Run all recipes' || ( github.event.workflow_run.name == 'Run all failed' && steps.latest-workflow-status.outputs.result != 'success' ) || github.event_name == 'workflow_dispatch' }} | ||
| # uses: actions/upload-artifact@v3 | ||
| # with: | ||
| # name: output_log | ||
| # path: log.txt | ||
| #- name: Create Issue if fails | ||
| # if: ${{ failure() }} | ||
| # env: | ||
| # GH_TOKEN: ${{ secrets.GH_TOKEN }} | ||
| # run: | | ||
| # github_id=$(gh api --header "Accept: application/vnd.github+json" --header 'X-GitHub-Api-Version:2022-11-28' --method GET /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues?state=open | jq '.[] | select(.title == "Recipe: Age_at_the_Bottom failing") | .number') | ||
| # if [ -z "$github_id" ] | ||
| # then | ||
| # gh api --header "Accept: application/vnd.github+json" --header 'X-GitHub-Api-Version:2022-11-28' --method POST /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues -f title="Recipe: Age_at_the_Bottom failing" -f body="Please check log in action workflow" | ||
| # #else | ||
| # # gh api --method POST -H "Accept: application/vnd.github+json" -H "X-GitHub-Api-Version: 2022-11-28" /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues/$github_id/comments -f body="Still failing" | ||
| # fi | ||
| #- name: Close Issue if success | ||
| # env: | ||
| # GH_TOKEN: ${{ secrets.GH_TOKEN }} | ||
| # run: | | ||
| # github_id=$(gh api --header "Accept: application/vnd.github+json" --header 'X-GitHub-Api-Version:2022-11-28' --method GET /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues?state=open | jq '.[] | select(.title == "Recipe: Age_at_the_Bottom failing") | .number') | ||
| # if [ ! -z "$github_id" ] | ||
| # then | ||
| # gh issue close --repo ACCESS-NRI/COSIMA-recipes-workflow $github_id | ||
| # fi | ||
