Run Atlantic_IndoPacific_Basin_Overturning_Circulation #3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run Atlantic_IndoPacific_Basin_Overturning_Circulation | |
| on: | |
| workflow_run: | |
| workflows: [ "Run all recipes", "Run all failed" ] | |
| types: | |
| - completed | |
| workflow_dispatch: | |
| jobs: | |
| run_recipe: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Get latest workflow run status | |
| uses: actions/github-script@v6 | |
| id: latest-workflow-status | |
| with: | |
| script: | | |
| const runs = await github.rest.actions.listWorkflowRuns({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| workflow_id: 'Atlantic_IndoPacific_Basin_Overturning_Circulation.yml', | |
| per_page: 2 | |
| }) | |
| return runs.data.workflow_runs[1].conclusion | |
| result-encoding: string | |
| - name: Run Atlantic_IndoPacific_Basin_Overturning_Circulation | |
| if: ${{ github.event.workflow_run.name == 'Run all recipes' || ( github.event.workflow_run.name == 'Run all failed' && steps.latest-workflow-status.outputs.result != 'success' ) || github.event_name == 'workflow_dispatch' }} | |
| uses: appleboy/ssh-action@v0.1.7 | |
| with: | |
| host: gadi.nci.org.au | |
| username: ${{secrets.GADI_USER}} | |
| key: ${{secrets.DEPLOY_KEY}} | |
| passphrase: ${{secrets.DEPLOY_KEY_PASSWORD}} | |
| command_timeout: 2400m | |
| script: | | |
| cd ${{secrets.GADI_SCRIPTS_DIR}}/../COSIMA-recipes/jobs | |
| qsub launch_Atlantic_IndoPacific_Basin_Overturning_Circulation.pbs | |
| - name: Get output log | |
| if: ${{ failure() || github.event.workflow_run.name == 'Run all recipes' || ( github.event.workflow_run.name == 'Run all failed' && steps.latest-workflow-status.outputs.result != 'success' ) || github.event_name == 'workflow_dispatch' }} | |
| uses: nicklasfrahm/scp-action@main | |
| with: | |
| direction: download | |
| host: gadi.nci.org.au | |
| username: ${{secrets.GADI_USER}} | |
| insecure_ignore_fingerprint: true | |
| key: ${{secrets.DEPLOY_KEY}} | |
| passphrase: ${{secrets.DEPLOY_KEY_PASSWORD}} | |
| source: ${{secrets.GADI_SCRIPTS_DIR}}/../COSIMA-recipes/logs/Atlantic_IndoPacific_Basin_Overturning_Circulation.out | |
| target: log.txt | |
| - name: Upload log as artifact | |
| if: ${{ failure() || github.event.workflow_run.name == 'Run all recipes' || ( github.event.workflow_run.name == 'Run all failed' && steps.latest-workflow-status.outputs.result != 'success' ) || github.event_name == 'workflow_dispatch' }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: output_log | |
| path: log.txt | |
| - name: Create Issue if fails | |
| if: ${{ failure() }} | |
| env: | |
| GH_TOKEN: ${{ secrets.GH_TOKEN }} | |
| run: | | |
| github_id=$(gh api --header "Accept: application/vnd.github+json" --header 'X-GitHub-Api-Version:2022-11-28' --method GET /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues?state=open | jq '.[] | select(.title == "Recipe: Atlantic_IndoPacific_Basin_Overturning_Circulation failing") | .number') | |
| if [ -z "$github_id" ] | |
| then | |
| gh api --header "Accept: application/vnd.github+json" --header 'X-GitHub-Api-Version:2022-11-28' --method POST /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues -f title="Recipe: Atlantic_IndoPacific_Basin_Overturning_Circulation failing" -f body="Please check log in action workflow" | |
| #else | |
| # gh api --method POST -H "Accept: application/vnd.github+json" -H "X-GitHub-Api-Version: 2022-11-28" /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues/$github_id/comments -f body="Still failing" | |
| fi | |
| - name: Close Issue if success | |
| env: | |
| GH_TOKEN: ${{ secrets.GH_TOKEN }} | |
| run: | | |
| github_id=$(gh api --header "Accept: application/vnd.github+json" --header 'X-GitHub-Api-Version:2022-11-28' --method GET /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues?state=open | jq '.[] | select(.title == "Recipe: Atlantic_IndoPacific_Basin_Overturning_Circulation failing") | .number') | |
| if [ ! -z "$github_id" ] | |
| then | |
| gh issue close --repo ACCESS-NRI/COSIMA-recipes-workflow $github_id | |
| fi |