Run COSIMA_CookBook_Tutorial #3
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| name: Run COSIMA_CookBook_Tutorial | |
| on: | |
| workflow_run: | |
| workflows: [ "Run all recipes", "Run all failed" ] | |
| types: | |
| - completed | |
| workflow_dispatch: | |
| jobs: | |
| run_recipe: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Get latest workflow run status | |
| uses: actions/github-script@v6 | |
| id: latest-workflow-status | |
| with: | |
| script: | | |
| const runs = await github.rest.actions.listWorkflowRuns({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| workflow_id: 'COSIMA_CookBook_Tutorial.yml', | |
| per_page: 2 | |
| }) | |
| return runs.data.workflow_runs[1].conclusion | |
| result-encoding: string | |
| - name: Run COSIMA_CookBook_Tutorial | |
| if: ${{ github.event.workflow_run.name == 'Run all recipes' || ( github.event.workflow_run.name == 'Run all failed' && steps.latest-workflow-status.outputs.result != 'success' ) || github.event_name == 'workflow_dispatch' }} | |
| uses: appleboy/ssh-action@v0.1.7 | |
| with: | |
| host: gadi.nci.org.au | |
| username: ${{secrets.GADI_USER}} | |
| key: ${{secrets.DEPLOY_KEY}} | |
| passphrase: ${{secrets.DEPLOY_KEY_PASSWORD}} | |
| command_timeout: 2400m | |
| script: | | |
| cd ${{secrets.GADI_SCRIPTS_DIR}}/../COSIMA-recipes/jobs | |
| qsub launch_COSIMA_CookBook_Tutorial.pbs | |
| - name: Get output log | |
| if: ${{ failure() || github.event.workflow_run.name == 'Run all recipes' || ( github.event.workflow_run.name == 'Run all failed' && steps.latest-workflow-status.outputs.result != 'success' ) || github.event_name == 'workflow_dispatch' }} | |
| uses: nicklasfrahm/scp-action@main | |
| with: | |
| direction: download | |
| host: gadi.nci.org.au | |
| username: ${{secrets.GADI_USER}} | |
| insecure_ignore_fingerprint: true | |
| key: ${{secrets.DEPLOY_KEY}} | |
| passphrase: ${{secrets.DEPLOY_KEY_PASSWORD}} | |
| source: ${{secrets.GADI_SCRIPTS_DIR}}/../COSIMA-recipes/logs/COSIMA_CookBook_Tutorial.out | |
| target: log.txt | |
| - name: Upload log as artifact | |
| if: ${{ failure() || github.event.workflow_run.name == 'Run all recipes' || ( github.event.workflow_run.name == 'Run all failed' && steps.latest-workflow-status.outputs.result != 'success' ) || github.event_name == 'workflow_dispatch' }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: output_log | |
| path: log.txt | |
| - name: Create Issue if fails | |
| if: ${{ failure() }} | |
| env: | |
| GH_TOKEN: ${{ secrets.GH_TOKEN }} | |
| run: | | |
| github_id=$(gh api --header "Accept: application/vnd.github+json" --header 'X-GitHub-Api-Version:2022-11-28' --method GET /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues?state=open | jq '.[] | select(.title == "Recipe: COSIMA_CookBook_Tutorial failing") | .number') | |
| if [ -z "$github_id" ] | |
| then | |
| gh api --header "Accept: application/vnd.github+json" --header 'X-GitHub-Api-Version:2022-11-28' --method POST /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues -f title="Recipe: COSIMA_CookBook_Tutorial failing" -f body="Please check log in action workflow" | |
| #else | |
| # gh api --method POST -H "Accept: application/vnd.github+json" -H "X-GitHub-Api-Version: 2022-11-28" /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues/$github_id/comments -f body="Still failing" | |
| fi | |
| - name: Close Issue if success | |
| env: | |
| GH_TOKEN: ${{ secrets.GH_TOKEN }} | |
| run: | | |
| github_id=$(gh api --header "Accept: application/vnd.github+json" --header 'X-GitHub-Api-Version:2022-11-28' --method GET /repos/ACCESS-NRI/COSIMA-recipes-workflow/issues?state=open | jq '.[] | select(.title == "Recipe: COSIMA_CookBook_Tutorial failing") | .number') | |
| if [ ! -z "$github_id" ] | |
| then | |
| gh issue close --repo ACCESS-NRI/COSIMA-recipes-workflow $github_id | |
| fi |